Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24715

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
4,708,919	-		LU632_RS24710	0.64	+0.3
4,708,969	-		LU632_RS24710	0.66	-1.5
4,708,969	-		LU632_RS24710	0.66	+2.1
4,709,038	+		LU632_RS24710	0.69	-0.1
4,709,038	+		LU632_RS24710	0.69	-0.4
4,709,076	-		LU632_RS24710	0.70	-0.7
4,709,120	-		LU632_RS24710	0.72	-0.7
4,709,323	-		LU632_RS24710	0.81	-1.5
4,709,323	-		LU632_RS24710	0.81	-1.3
4,709,371	+		LU632_RS24710	0.83	-1.2
4,709,372	-		LU632_RS24710	0.83	-1.4
4,709,372	-		LU632_RS24710	0.83	-0.3
4,709,376	-		LU632_RS24710	0.83	-2.5
4,709,376	-		LU632_RS24710	0.83	-1.6
4,709,412	-		LU632_RS24710	0.84	+0.3
4,709,413	+		LU632_RS24710	0.84	-0.7
4,709,413	+		LU632_RS24710	0.84	+0.5
4,709,413	+		LU632_RS24710	0.84	+0.3
4,709,413	+		LU632_RS24710	0.84	-1.1
4,709,414	-		LU632_RS24710	0.84	+0.8
4,709,414	-		LU632_RS24710	0.84	-1.0
4,709,414	-		LU632_RS24710	0.84	-3.5
4,709,414	-		LU632_RS24710	0.84	+0.9
4,709,414	-		LU632_RS24710	0.84	+0.1
4,709,471	+		LU632_RS24710	0.87	+0.9
4,709,519	+		LU632_RS24710	0.89	+1.1
4,709,550	+				+1.7
4,709,550	+				-2.8
4,709,550	+				-3.4
4,709,717	+				+1.1
4,709,739	+				-0.9
4,709,740	-				-0.8
4,709,740	-				+0.2
4,709,740	-				+0.8
4,709,740	-				+0.3
4,709,740	-				+0.7
4,709,740	-				+2.1
4,709,796	+				-3.1
4,709,802	+				+0.6
4,709,803	-				-0.7
4,709,880	+				-0.8
4,709,901	-				-0.1
4,710,023	+		LU632_RS24715	0.26	+1.5
4,710,044	-		LU632_RS24715	0.30	+0.3
4,710,097	+		LU632_RS24715	0.40	+2.7
4,710,101	+		LU632_RS24715	0.40	-0.4
4,710,102	-		LU632_RS24715	0.41	-1.1
4,710,102	-		LU632_RS24715	0.41	-0.8
4,710,125	-		LU632_RS24715	0.45	-0.9
4,710,220	-		LU632_RS24715	0.63	-0.0
4,710,310	+		LU632_RS24715	0.80	-0.1
4,710,311	-		LU632_RS24715	0.80	+0.7
4,710,311	-		LU632_RS24715	0.80	+2.1
4,710,312	+		LU632_RS24715	0.80	-0.8
4,710,313	-		LU632_RS24715	0.80	-1.1
4,710,417	+				+2.2
4,710,452	+				+2.3
4,710,473	-				+0.8
4,710,510	-				+0.8
4,710,618	-		LU632_RS24720	0.17	-0.8
4,710,777	-		LU632_RS24720	0.37	+1.5
4,710,971	+		LU632_RS24720	0.62	+0.3
4,711,097	+		LU632_RS24720	0.79	-0.7
4,711,152	-		LU632_RS24720	0.86	+1.2