Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24240

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
4,622,271	+	wecC	LU632_RS24235	0.25	-0.3
4,622,397	+	wecC	LU632_RS24235	0.35	-2.4
4,622,455	-	wecC	LU632_RS24235	0.40	-0.2
4,622,497	+	wecC	LU632_RS24235	0.43	-0.9
4,622,599	-	wecC	LU632_RS24235	0.51	-2.5
4,622,750	+	wecC	LU632_RS24235	0.63	-1.3
4,623,094	-				-1.4
4,623,094	-				+1.0
4,623,094	-				-0.5
4,623,096	+				+1.9
4,623,096	+				-0.5
4,623,096	+				+0.1
4,623,096	+				+0.9
4,623,096	+				+0.3
4,623,217	-				+2.0
4,623,236	+				-1.8
4,623,237	-				+1.4
4,623,277	+				-3.3
4,623,285	-				+1.1
4,623,307	+				-1.0
4,623,308	-				-1.9
4,623,501	+	wecB	LU632_RS24240	0.25	-0.1
4,623,502	-	wecB	LU632_RS24240	0.26	-1.0
4,623,527	-	wecB	LU632_RS24240	0.28	-1.8
4,623,543	-	wecB	LU632_RS24240	0.29	-0.5
4,623,573	-	wecB	LU632_RS24240	0.32	-0.7
4,623,579	-	wecB	LU632_RS24240	0.32	-1.1
4,623,789	+	wecB	LU632_RS24240	0.51	+0.0
4,623,789	+	wecB	LU632_RS24240	0.51	-2.9
4,623,790	-	wecB	LU632_RS24240	0.51	-2.3
4,623,805	-	wecB	LU632_RS24240	0.52	-1.4
4,623,913	+	wecB	LU632_RS24240	0.62	+0.1
4,623,939	-	wecB	LU632_RS24240	0.64	-2.5
4,623,967	+	wecB	LU632_RS24240	0.67	+1.7
4,624,022	-	wecB	LU632_RS24240	0.72	+0.2
4,624,098	-	wecB	LU632_RS24240	0.78	-0.1
4,624,101	+	wecB	LU632_RS24240	0.79	-0.9
4,624,111	-	wecB	LU632_RS24240	0.79	-2.4
4,624,206	+	wecB	LU632_RS24240	0.88	-2.7
4,624,258	-				-2.2
4,624,595	+	wzzE	LU632_RS24245	0.20	+1.5
4,624,688	-	wzzE	LU632_RS24245	0.29	+0.1
4,624,705	-	wzzE	LU632_RS24245	0.30	+1.0
4,624,781	+	wzzE	LU632_RS24245	0.38	-0.7
4,624,782	-	wzzE	LU632_RS24245	0.38	+0.9
4,624,907	+	wzzE	LU632_RS24245	0.50	+0.1
4,625,002	+	wzzE	LU632_RS24245	0.59	-0.4
4,625,003	-	wzzE	LU632_RS24245	0.59	+0.9
4,625,027	-	wzzE	LU632_RS24245	0.62	-0.7
4,625,027	-	wzzE	LU632_RS24245	0.62	-1.7
4,625,032	-	wzzE	LU632_RS24245	0.62	-0.1
4,625,032	-	wzzE	LU632_RS24245	0.62	-1.1
4,625,032	-	wzzE	LU632_RS24245	0.62	-1.7
4,625,070	-	wzzE	LU632_RS24245	0.66	-0.1
4,625,073	-	wzzE	LU632_RS24245	0.66	-0.3
4,625,172	+	wzzE	LU632_RS24245	0.76	-2.3
4,625,172	+	wzzE	LU632_RS24245	0.76	-0.9
4,625,173	-	wzzE	LU632_RS24245	0.76	+1.3
4,625,173	-	wzzE	LU632_RS24245	0.76	+2.4
4,625,173	-	wzzE	LU632_RS24245	0.76	-3.1
4,625,173	-	wzzE	LU632_RS24245	0.76	+0.4
4,625,181	+	wzzE	LU632_RS24245	0.77	-1.3
4,625,200	-	wzzE	LU632_RS24245	0.78	-1.5
4,625,222	+	wzzE	LU632_RS24245	0.81	-0.1
4,625,238	+	wzzE	LU632_RS24245	0.82	-1.4
4,625,239	-	wzzE	LU632_RS24245	0.82	+0.3
4,625,307	-	wzzE	LU632_RS24245	0.89	+0.8
4,625,307	-	wzzE	LU632_RS24245	0.89	+0.9
4,625,324	-				+0.9