Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22775

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
4,335,274	-				+0.1
4,335,282	-				+0.1
4,335,348	-				+1.7
4,335,348	-				-0.4
4,335,348	-				-2.0
4,335,348	-				+0.6
4,335,348	-				+1.1
4,335,382	+				-1.2
4,336,222	+				-0.4
4,336,222	+				-2.7
4,336,224	+				+1.4
4,336,224	+				-0.4
4,336,337	+		LU632_RS22775	0.14	-0.7
4,336,410	+		LU632_RS22775	0.26	+2.4
4,336,410	+		LU632_RS22775	0.26	-2.3
4,336,410	+		LU632_RS22775	0.26	+1.0
4,336,411	-		LU632_RS22775	0.27	+0.4
4,336,496	+		LU632_RS22775	0.41	+1.8
4,336,507	-		LU632_RS22775	0.42	-1.5
4,336,781	+		LU632_RS22775	0.88	+0.9
4,336,781	+		LU632_RS22775	0.88	+1.7
4,336,781	+		LU632_RS22775	0.88	-3.0
4,336,781	+		LU632_RS22775	0.88	-2.0
4,336,782	-		LU632_RS22775	0.88	-1.3
4,336,784	+		LU632_RS22775	0.88	-0.3
4,336,784	+		LU632_RS22775	0.88	-0.4
4,336,784	+		LU632_RS22775	0.88	+1.1
4,336,784	+		LU632_RS22775	0.88	-3.0
4,336,784	+		LU632_RS22775	0.88	+0.1
4,336,785	-		LU632_RS22775	0.89	+1.7
4,336,785	-		LU632_RS22775	0.89	+1.2
4,336,785	-		LU632_RS22775	0.89	+1.1
4,336,787	+		LU632_RS22775	0.89	+0.2
4,336,787	+		LU632_RS22775	0.89	-1.2
4,336,787	+		LU632_RS22775	0.89	+0.4
4,336,787	+		LU632_RS22775	0.89	+0.8
4,336,788	-		LU632_RS22775	0.89	-1.6
4,336,788	-		LU632_RS22775	0.89	-1.5
4,336,788	-		LU632_RS22775	0.89	+1.2
4,336,788	-		LU632_RS22775	0.89	+1.5
4,336,788	-		LU632_RS22775	0.89	-0.7
4,336,854	-				+2.3
4,336,902	+				-1.7
4,336,908	+				+1.3
4,336,928	+				-1.2
4,336,945	+				+1.8
4,336,945	+				-1.5
4,337,125	-		LU632_RS22780	0.19	-0.3
4,337,168	-		LU632_RS22780	0.24	-3.9
4,337,384	+		LU632_RS22780	0.46	-1.7
4,337,384	+		LU632_RS22780	0.46	-0.7
4,337,384	+		LU632_RS22780	0.46	+0.3
4,337,428	+		LU632_RS22780	0.51	+0.8
4,337,429	-		LU632_RS22780	0.51	+1.9
4,337,429	-		LU632_RS22780	0.51	+1.2
4,337,524	+		LU632_RS22780	0.61	-0.6
4,337,683	+		LU632_RS22780	0.77	-2.3
4,337,758	-		LU632_RS22780	0.85	-0.3
4,337,836	+				+0.4
4,337,837	-				+4.1
4,337,851	+				-1.2