Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22030 and LU632_RS22035 are separated by 25 nucleotides LU632_RS22035 and LU632_RS22040 overlap by 20 nucleotides LU632_RS22040 and LU632_RS22045 are separated by 65 nucleotides
LU632_RS22030: LU632_RS22030 - ABC transporter permease, at 4,205,461 to 4,206,552
_RS22030
LU632_RS22035: LU632_RS22035 - ABC transporter ATP-binding protein, at 4,206,578 to 4,207,489
_RS22035
LU632_RS22040: LU632_RS22040 - HlyD family efflux transporter periplasmic adaptor subunit, at 4,207,470 to 4,208,408
_RS22040
LU632_RS22045: LU632_RS22045 - lysophospholipid acyltransferase family protein, at 4,208,474 to 4,210,189
_RS22045
Position (kb) 4207
4208
4209 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4206.511 kb on + strand at 4206.511 kb on + strand at 4206.511 kb on + strand at 4206.607 kb on + strand at 4206.607 kb on + strand at 4206.608 kb on - strand at 4206.608 kb on - strand at 4206.711 kb on + strand, within LU632_RS22035 at 4206.711 kb on + strand, within LU632_RS22035 at 4206.803 kb on + strand, within LU632_RS22035 at 4206.803 kb on + strand, within LU632_RS22035 at 4206.804 kb on - strand, within LU632_RS22035 at 4206.804 kb on - strand, within LU632_RS22035 at 4206.876 kb on + strand, within LU632_RS22035 at 4206.910 kb on + strand, within LU632_RS22035 at 4206.911 kb on - strand, within LU632_RS22035 at 4206.911 kb on - strand, within LU632_RS22035 at 4206.912 kb on + strand, within LU632_RS22035 at 4206.912 kb on + strand, within LU632_RS22035 at 4206.913 kb on - strand, within LU632_RS22035 at 4206.913 kb on - strand, within LU632_RS22035 at 4207.022 kb on + strand, within LU632_RS22035 at 4207.285 kb on + strand, within LU632_RS22035 at 4207.349 kb on - strand, within LU632_RS22035 at 4207.457 kb on - strand at 4207.466 kb on + strand at 4207.467 kb on - strand at 4207.571 kb on + strand, within LU632_RS22040 at 4207.572 kb on - strand, within LU632_RS22040 at 4207.604 kb on - strand, within LU632_RS22040 at 4207.642 kb on + strand, within LU632_RS22040 at 4207.643 kb on - strand, within LU632_RS22040 at 4207.643 kb on - strand, within LU632_RS22040 at 4207.659 kb on + strand, within LU632_RS22040 at 4207.660 kb on - strand, within LU632_RS22040 at 4207.660 kb on - strand, within LU632_RS22040 at 4207.685 kb on - strand, within LU632_RS22040 at 4207.723 kb on - strand, within LU632_RS22040 at 4208.074 kb on + strand, within LU632_RS22040 at 4208.138 kb on + strand, within LU632_RS22040 at 4208.141 kb on + strand, within LU632_RS22040 at 4208.142 kb on - strand, within LU632_RS22040 at 4208.204 kb on - strand, within LU632_RS22040 at 4208.240 kb on + strand, within LU632_RS22040 at 4208.263 kb on - strand, within LU632_RS22040 at 4208.301 kb on + strand, within LU632_RS22040 at 4208.311 kb on - strand, within LU632_RS22040 at 4208.354 kb on - strand at 4208.590 kb on + strand at 4208.876 kb on + strand, within LU632_RS22045 at 4208.989 kb on + strand, within LU632_RS22045 at 4209.057 kb on - strand, within LU632_RS22045 at 4209.059 kb on - strand, within LU632_RS22045 at 4209.138 kb on - strand, within LU632_RS22045 at 4209.389 kb on + strand, within LU632_RS22045 at 4209.390 kb on - strand, within LU632_RS22045
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 4,206,511 + -0.7 4,206,511 + +1.6 4,206,511 + +2.4 4,206,607 + -0.2 4,206,607 + -3.4 4,206,608 - -1.2 4,206,608 - +0.3 4,206,711 + LU632_RS22035 0.15 -1.2 4,206,711 + LU632_RS22035 0.15 -0.4 4,206,803 + LU632_RS22035 0.25 -2.0 4,206,803 + LU632_RS22035 0.25 +2.7 4,206,804 - LU632_RS22035 0.25 +1.1 4,206,804 - LU632_RS22035 0.25 +1.0 4,206,876 + LU632_RS22035 0.33 -3.1 4,206,910 + LU632_RS22035 0.36 +1.1 4,206,911 - LU632_RS22035 0.37 -2.0 4,206,911 - LU632_RS22035 0.37 -1.3 4,206,912 + LU632_RS22035 0.37 -3.2 4,206,912 + LU632_RS22035 0.37 -1.7 4,206,913 - LU632_RS22035 0.37 -2.2 4,206,913 - LU632_RS22035 0.37 +0.2 4,207,022 + LU632_RS22035 0.49 +0.0 4,207,285 + LU632_RS22035 0.78 +0.8 4,207,349 - LU632_RS22035 0.85 -3.8 4,207,457 - +0.8 4,207,466 + +0.8 4,207,467 - -0.4 4,207,571 + LU632_RS22040 0.11 +1.2 4,207,572 - LU632_RS22040 0.11 +0.8 4,207,604 - LU632_RS22040 0.14 -1.6 4,207,642 + LU632_RS22040 0.18 -1.1 4,207,643 - LU632_RS22040 0.18 +3.5 4,207,643 - LU632_RS22040 0.18 -2.5 4,207,659 + LU632_RS22040 0.20 +0.1 4,207,660 - LU632_RS22040 0.20 -2.3 4,207,660 - LU632_RS22040 0.20 -1.2 4,207,685 - LU632_RS22040 0.23 +0.6 4,207,723 - LU632_RS22040 0.27 -0.2 4,208,074 + LU632_RS22040 0.64 -0.2 4,208,138 + LU632_RS22040 0.71 -1.8 4,208,141 + LU632_RS22040 0.71 +1.4 4,208,142 - LU632_RS22040 0.72 -2.2 4,208,204 - LU632_RS22040 0.78 +0.8 4,208,240 + LU632_RS22040 0.82 -1.6 4,208,263 - LU632_RS22040 0.84 +1.4 4,208,301 + LU632_RS22040 0.88 +0.1 4,208,311 - LU632_RS22040 0.90 -1.2 4,208,354 - -1.7 4,208,590 + +0.1 4,208,876 + LU632_RS22045 0.23 -1.0 4,208,989 + LU632_RS22045 0.30 +0.3 4,209,057 - LU632_RS22045 0.34 +2.0 4,209,059 - LU632_RS22045 0.34 -2.0 4,209,138 - LU632_RS22045 0.39 +1.0 4,209,389 + LU632_RS22045 0.53 -0.6 4,209,390 - LU632_RS22045 0.53 +0.3
Or see this region's nucleotide sequence