Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22030

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
4,204,578	+	rph	LU632_RS22020	0.37	-4.5
4,204,579	-	rph	LU632_RS22020	0.37	+0.5
4,204,579	-	rph	LU632_RS22020	0.37	+0.1
4,204,583	+	rph	LU632_RS22020	0.38	-5.0
4,204,584	-	rph	LU632_RS22020	0.38	+0.1
4,204,584	-	rph	LU632_RS22020	0.38	-0.8
4,204,694	+	rph	LU632_RS22020	0.53	+0.8
4,204,694	+	rph	LU632_RS22020	0.53	-5.2
4,204,694	+	rph	LU632_RS22020	0.53	-1.2
4,204,695	-	rph	LU632_RS22020	0.54	-0.2
4,204,835	+	rph	LU632_RS22020	0.73	-0.2
4,204,835	+	rph	LU632_RS22020	0.73	-2.8
4,204,836	-	rph	LU632_RS22020	0.73	+2.2
4,204,836	-	rph	LU632_RS22020	0.73	-1.8
4,204,836	-	rph	LU632_RS22020	0.73	+2.9
4,204,836	-	rph	LU632_RS22020	0.73	+0.2
4,204,836	-	rph	LU632_RS22020	0.73	-2.2
4,204,836	-	rph	LU632_RS22020	0.73	-1.2
4,204,841	-	rph	LU632_RS22020	0.74	-1.9
4,204,969	+				-1.6
4,205,054	+				-0.2
4,205,070	+				+0.1
4,205,101	+				+2.6
4,205,102	-				-1.8
4,205,104	+				+1.2
4,205,104	+				+2.5
4,205,104	+				-1.4
4,205,160	+		LU632_RS22025	0.31	+1.0
4,205,161	-		LU632_RS22025	0.32	+2.3
4,205,161	-		LU632_RS22025	0.32	-1.2
4,205,161	-		LU632_RS22025	0.32	-2.5
4,205,253	-		LU632_RS22025	0.70	+1.5
4,205,327	-				+1.4
4,205,373	-				+0.7
4,205,396	+				-0.6
4,205,397	-				-0.2
4,205,397	-				+1.1
4,205,399	-				+1.2
4,205,399	-				-0.9
4,205,399	-				-0.8
4,205,399	-				+3.3
4,205,425	-				-0.6
4,205,495	-				+0.8
4,205,495	-				-0.6
4,205,496	+				+0.4
4,205,497	-				+0.8
4,205,612	-		LU632_RS22030	0.14	+1.0
4,205,662	-		LU632_RS22030	0.18	+0.3
4,205,674	+		LU632_RS22030	0.20	-0.5
4,205,675	-		LU632_RS22030	0.20	-3.1
4,205,691	+		LU632_RS22030	0.21	-0.2
4,205,723	-		LU632_RS22030	0.24	+0.7
4,205,754	+		LU632_RS22030	0.27	+1.2
4,205,780	+		LU632_RS22030	0.29	-0.1
4,205,794	+		LU632_RS22030	0.30	+0.7
4,205,795	-		LU632_RS22030	0.31	-2.2
4,205,796	+		LU632_RS22030	0.31	-1.9
4,205,796	+		LU632_RS22030	0.31	+0.3
4,205,796	+		LU632_RS22030	0.31	-2.7
4,205,797	-		LU632_RS22030	0.31	-1.8
4,205,859	+		LU632_RS22030	0.36	+0.8
4,205,876	-		LU632_RS22030	0.38	-1.5
4,205,891	+		LU632_RS22030	0.39	+0.6
4,205,892	-		LU632_RS22030	0.39	+0.7
4,206,050	+		LU632_RS22030	0.54	-2.3
4,206,058	-		LU632_RS22030	0.55	+1.3
4,206,087	+		LU632_RS22030	0.57	+0.5
4,206,289	+		LU632_RS22030	0.76	+0.8
4,206,290	-		LU632_RS22030	0.76	-1.3
4,206,306	+		LU632_RS22030	0.77	-0.3
4,206,307	-		LU632_RS22030	0.77	+1.9
4,206,415	-		LU632_RS22030	0.87	-2.2
4,206,415	-		LU632_RS22030	0.87	-0.3
4,206,450	+				-3.0
4,206,511	+				-0.7
4,206,511	+				+1.6
4,206,511	+				+2.4
4,206,607	+				-0.2
4,206,607	+				-3.4
4,206,608	-				-1.2
4,206,608	-				+0.3
4,206,711	+		LU632_RS22035	0.15	-1.2
4,206,711	+		LU632_RS22035	0.15	-0.4
4,206,803	+		LU632_RS22035	0.25	-2.0
4,206,803	+		LU632_RS22035	0.25	+2.7
4,206,804	-		LU632_RS22035	0.25	+1.1
4,206,804	-		LU632_RS22035	0.25	+1.0
4,206,876	+		LU632_RS22035	0.33	-3.1
4,206,910	+		LU632_RS22035	0.36	+1.1
4,206,911	-		LU632_RS22035	0.37	-2.0
4,206,911	-		LU632_RS22035	0.37	-1.3
4,206,912	+		LU632_RS22035	0.37	-3.2
4,206,912	+		LU632_RS22035	0.37	-1.7
4,206,913	-		LU632_RS22035	0.37	-2.2
4,206,913	-		LU632_RS22035	0.37	+0.2
4,207,022	+		LU632_RS22035	0.49	+0.0
4,207,285	+		LU632_RS22035	0.78	+0.8
4,207,349	-		LU632_RS22035	0.85	-3.8
4,207,457	-				+0.8
4,207,466	+				+0.8
4,207,467	-				-0.4