Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21675

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
4,145,624	-	opgB	LU632_RS21670	0.57	-3.2
4,145,648	-	opgB	LU632_RS21670	0.58	-0.3
4,145,670	+	opgB	LU632_RS21670	0.59	-0.5
4,145,671	-	opgB	LU632_RS21670	0.59	+0.1
4,145,769	+	opgB	LU632_RS21670	0.63	+1.0
4,145,878	+	opgB	LU632_RS21670	0.68	-1.6
4,145,952	-	opgB	LU632_RS21670	0.71	-1.6
4,146,142	+	opgB	LU632_RS21670	0.79	-1.8
4,146,177	+	opgB	LU632_RS21670	0.81	+0.6
4,146,361	+	opgB	LU632_RS21670	0.88	-0.8
4,146,438	+				+3.2
4,146,573	+				+0.7
4,146,612	-				+0.1
4,146,789	-		LU632_RS21675	0.83	-0.1
4,146,955	+				+1.2
4,147,791	-				+0.5
4,147,797	-				-3.1
4,147,819	+				-1.3
4,147,819	+				-1.2