Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS21390 and LU632_RS21395 are separated by 61 nucleotides LU632_RS21395 and aaeB are separated by 133 nucleotides aaeB and aaeA are separated by 4 nucleotides aaeA and LU632_RS21410 are separated by 7 nucleotides
LU632_RS21390: LU632_RS21390 - IS481 family transposase, at 4,087,742 to 4,088,520
_RS21390
LU632_RS21395: LU632_RS21395 - aldehyde dehydrogenase family protein, at 4,088,582 to 4,088,935
_RS21395
LU632_RS21400: aaeB - p-hydroxybenzoic acid efflux pump subunit AaeB, at 4,089,069 to 4,091,027
aaeB
LU632_RS21405: aaeA - p-hydroxybenzoic acid efflux pump subunit AaeA, at 4,091,032 to 4,091,964
aaeA
LU632_RS21410: LU632_RS21410 - p-hydroxybenzoic acid efflux pump operon protein AaeX, at 4,091,972 to 4,092,175
_RS21410
Position (kb) 4089
4090
4091
4092 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4088.582 kb on - strand at 4088.833 kb on + strand, within LU632_RS21395 at 4088.834 kb on - strand, within LU632_RS21395 at 4088.879 kb on - strand, within LU632_RS21395 at 4088.879 kb on - strand, within LU632_RS21395 at 4088.882 kb on + strand, within LU632_RS21395 at 4088.886 kb on + strand, within LU632_RS21395 at 4088.887 kb on - strand, within LU632_RS21395 at 4088.887 kb on - strand, within LU632_RS21395 at 4089.002 kb on + strand at 4089.002 kb on + strand at 4089.002 kb on + strand at 4089.002 kb on + strand at 4089.006 kb on + strand at 4089.006 kb on + strand at 4089.006 kb on + strand at 4089.006 kb on + strand at 4089.007 kb on - strand at 4089.007 kb on - strand at 4089.007 kb on - strand at 4089.007 kb on - strand at 4089.007 kb on - strand at 4089.008 kb on + strand at 4089.008 kb on + strand at 4089.008 kb on + strand at 4089.009 kb on - strand at 4089.009 kb on - strand at 4089.009 kb on - strand at 4089.094 kb on + strand at 4089.154 kb on + strand at 4089.154 kb on + strand at 4089.157 kb on + strand at 4089.158 kb on - strand at 4089.162 kb on + strand at 4089.162 kb on + strand at 4089.162 kb on + strand at 4089.163 kb on - strand at 4089.175 kb on + strand at 4089.175 kb on + strand at 4089.175 kb on + strand at 4089.176 kb on - strand at 4089.196 kb on - strand at 4089.221 kb on + strand at 4089.273 kb on - strand, within aaeB at 4089.314 kb on + strand, within aaeB at 4089.314 kb on + strand, within aaeB at 4089.315 kb on - strand, within aaeB at 4089.363 kb on - strand, within aaeB at 4089.383 kb on + strand, within aaeB at 4089.384 kb on - strand, within aaeB at 4089.409 kb on + strand, within aaeB at 4089.476 kb on - strand, within aaeB at 4089.479 kb on + strand, within aaeB at 4089.479 kb on + strand, within aaeB at 4089.480 kb on - strand, within aaeB at 4089.480 kb on - strand, within aaeB at 4089.516 kb on - strand, within aaeB at 4089.620 kb on + strand, within aaeB at 4089.639 kb on - strand, within aaeB at 4089.736 kb on - strand, within aaeB at 4089.740 kb on + strand, within aaeB at 4089.741 kb on - strand, within aaeB at 4089.772 kb on + strand, within aaeB at 4089.773 kb on - strand, within aaeB at 4089.773 kb on - strand, within aaeB at 4089.776 kb on - strand, within aaeB at 4090.026 kb on + strand, within aaeB at 4090.027 kb on - strand, within aaeB at 4090.075 kb on - strand, within aaeB at 4090.088 kb on - strand, within aaeB at 4090.088 kb on - strand, within aaeB at 4090.131 kb on - strand, within aaeB at 4090.181 kb on + strand, within aaeB at 4090.239 kb on + strand, within aaeB at 4090.240 kb on - strand, within aaeB at 4090.241 kb on + strand, within aaeB at 4090.241 kb on + strand, within aaeB at 4090.241 kb on + strand, within aaeB at 4090.241 kb on + strand, within aaeB at 4090.242 kb on - strand, within aaeB at 4090.242 kb on - strand, within aaeB at 4090.242 kb on - strand, within aaeB at 4090.243 kb on + strand, within aaeB at 4090.243 kb on + strand, within aaeB at 4090.244 kb on - strand, within aaeB at 4090.244 kb on - strand, within aaeB at 4090.270 kb on + strand, within aaeB at 4090.365 kb on + strand, within aaeB at 4090.366 kb on - strand, within aaeB at 4090.366 kb on - strand, within aaeB at 4090.366 kb on - strand, within aaeB at 4090.425 kb on - strand, within aaeB at 4090.474 kb on + strand, within aaeB at 4090.577 kb on + strand, within aaeB at 4090.652 kb on + strand, within aaeB at 4090.808 kb on + strand, within aaeB at 4090.808 kb on + strand, within aaeB at 4090.829 kb on + strand, within aaeB at 4090.832 kb on + strand at 4090.832 kb on + strand at 4090.910 kb on + strand at 4090.911 kb on - strand at 4091.018 kb on - strand at 4091.018 kb on - strand at 4091.065 kb on + strand at 4091.066 kb on - strand at 4091.173 kb on - strand, within aaeA at 4091.241 kb on + strand, within aaeA at 4091.292 kb on + strand, within aaeA at 4091.297 kb on + strand, within aaeA at 4091.298 kb on - strand, within aaeA at 4091.378 kb on + strand, within aaeA at 4091.378 kb on + strand, within aaeA at 4091.378 kb on + strand, within aaeA at 4091.379 kb on - strand, within aaeA at 4091.379 kb on - strand, within aaeA at 4091.391 kb on - strand, within aaeA at 4091.608 kb on + strand, within aaeA at 4091.610 kb on + strand, within aaeA at 4091.678 kb on + strand, within aaeA at 4091.678 kb on + strand, within aaeA at 4091.871 kb on - strand at 4091.950 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 4,088,582 - +1.6 4,088,833 + LU632_RS21395 0.71 +0.6 4,088,834 - LU632_RS21395 0.71 +0.8 4,088,879 - LU632_RS21395 0.84 -1.7 4,088,879 - LU632_RS21395 0.84 +0.7 4,088,882 + LU632_RS21395 0.85 +0.7 4,088,886 + LU632_RS21395 0.86 -0.3 4,088,887 - LU632_RS21395 0.86 +0.9 4,088,887 - LU632_RS21395 0.86 -0.3 4,089,002 + +0.1 4,089,002 + +0.9 4,089,002 + +1.2 4,089,002 + -0.9 4,089,006 + -1.8 4,089,006 + +0.0 4,089,006 + +2.4 4,089,006 + -1.2 4,089,007 - +0.3 4,089,007 - +2.2 4,089,007 - +1.1 4,089,007 - +0.1 4,089,007 - -0.7 4,089,008 + +0.7 4,089,008 + +2.9 4,089,008 + +1.2 4,089,009 - +1.0 4,089,009 - -0.3 4,089,009 - -0.7 4,089,094 + -0.6 4,089,154 + +0.0 4,089,154 + -0.5 4,089,157 + -0.7 4,089,158 - +0.8 4,089,162 + -2.9 4,089,162 + +0.7 4,089,162 + +0.4 4,089,163 - +0.1 4,089,175 + -1.0 4,089,175 + +0.4 4,089,175 + +1.0 4,089,176 - -0.7 4,089,196 - -1.5 4,089,221 + +0.5 4,089,273 - aaeB LU632_RS21400 0.10 -0.7 4,089,314 + aaeB LU632_RS21400 0.13 -0.2 4,089,314 + aaeB LU632_RS21400 0.13 -0.2 4,089,315 - aaeB LU632_RS21400 0.13 -1.5 4,089,363 - aaeB LU632_RS21400 0.15 +1.1 4,089,383 + aaeB LU632_RS21400 0.16 +0.8 4,089,384 - aaeB LU632_RS21400 0.16 +0.8 4,089,409 + aaeB LU632_RS21400 0.17 +0.8 4,089,476 - aaeB LU632_RS21400 0.21 -2.0 4,089,479 + aaeB LU632_RS21400 0.21 -0.9 4,089,479 + aaeB LU632_RS21400 0.21 +0.1 4,089,480 - aaeB LU632_RS21400 0.21 +0.1 4,089,480 - aaeB LU632_RS21400 0.21 -0.0 4,089,516 - aaeB LU632_RS21400 0.23 +0.2 4,089,620 + aaeB LU632_RS21400 0.28 +1.9 4,089,639 - aaeB LU632_RS21400 0.29 +0.2 4,089,736 - aaeB LU632_RS21400 0.34 -2.6 4,089,740 + aaeB LU632_RS21400 0.34 -3.6 4,089,741 - aaeB LU632_RS21400 0.34 +0.7 4,089,772 + aaeB LU632_RS21400 0.36 +1.9 4,089,773 - aaeB LU632_RS21400 0.36 -0.7 4,089,773 - aaeB LU632_RS21400 0.36 -0.4 4,089,776 - aaeB LU632_RS21400 0.36 +0.5 4,090,026 + aaeB LU632_RS21400 0.49 +0.4 4,090,027 - aaeB LU632_RS21400 0.49 +1.5 4,090,075 - aaeB LU632_RS21400 0.51 +3.4 4,090,088 - aaeB LU632_RS21400 0.52 -0.1 4,090,088 - aaeB LU632_RS21400 0.52 +0.3 4,090,131 - aaeB LU632_RS21400 0.54 +1.1 4,090,181 + aaeB LU632_RS21400 0.57 +0.4 4,090,239 + aaeB LU632_RS21400 0.60 +1.1 4,090,240 - aaeB LU632_RS21400 0.60 -2.5 4,090,241 + aaeB LU632_RS21400 0.60 +0.3 4,090,241 + aaeB LU632_RS21400 0.60 -2.9 4,090,241 + aaeB LU632_RS21400 0.60 -2.6 4,090,241 + aaeB LU632_RS21400 0.60 -0.3 4,090,242 - aaeB LU632_RS21400 0.60 -2.9 4,090,242 - aaeB LU632_RS21400 0.60 -2.7 4,090,242 - aaeB LU632_RS21400 0.60 -0.3 4,090,243 + aaeB LU632_RS21400 0.60 +0.3 4,090,243 + aaeB LU632_RS21400 0.60 -1.2 4,090,244 - aaeB LU632_RS21400 0.60 -1.5 4,090,244 - aaeB LU632_RS21400 0.60 -3.1 4,090,270 + aaeB LU632_RS21400 0.61 +0.4 4,090,365 + aaeB LU632_RS21400 0.66 +3.0 4,090,366 - aaeB LU632_RS21400 0.66 +1.2 4,090,366 - aaeB LU632_RS21400 0.66 -0.3 4,090,366 - aaeB LU632_RS21400 0.66 +0.4 4,090,425 - aaeB LU632_RS21400 0.69 +3.0 4,090,474 + aaeB LU632_RS21400 0.72 +0.4 4,090,577 + aaeB LU632_RS21400 0.77 +0.8 4,090,652 + aaeB LU632_RS21400 0.81 +1.7 4,090,808 + aaeB LU632_RS21400 0.89 -2.0 4,090,808 + aaeB LU632_RS21400 0.89 -1.6 4,090,829 + aaeB LU632_RS21400 0.90 +1.1 4,090,832 + -0.4 4,090,832 + -1.2 4,090,910 + -0.5 4,090,911 - -2.4 4,091,018 - +0.6 4,091,018 - -3.7 4,091,065 + -1.7 4,091,066 - -2.9 4,091,173 - aaeA LU632_RS21405 0.15 -2.6 4,091,241 + aaeA LU632_RS21405 0.22 +0.4 4,091,292 + aaeA LU632_RS21405 0.28 -3.5 4,091,297 + aaeA LU632_RS21405 0.28 +3.1 4,091,298 - aaeA LU632_RS21405 0.29 +0.3 4,091,378 + aaeA LU632_RS21405 0.37 +0.8 4,091,378 + aaeA LU632_RS21405 0.37 +0.9 4,091,378 + aaeA LU632_RS21405 0.37 +2.9 4,091,379 - aaeA LU632_RS21405 0.37 -0.2 4,091,379 - aaeA LU632_RS21405 0.37 +0.1 4,091,391 - aaeA LU632_RS21405 0.38 -1.5 4,091,608 + aaeA LU632_RS21405 0.62 +0.9 4,091,610 + aaeA LU632_RS21405 0.62 +1.3 4,091,678 + aaeA LU632_RS21405 0.69 -0.9 4,091,678 + aaeA LU632_RS21405 0.69 +0.0 4,091,871 - -2.5 4,091,950 - -1.5
Or see this region's nucleotide sequence