Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mlaF and LU632_RS21250 are separated by 225 nucleotides LU632_RS21250 and kdsD are separated by 5 nucleotides
LU632_RS21245: mlaF - phospholipid ABC transporter ATP-binding protein MlaF, at 4,056,673 to 4,057,485
mlaF
LU632_RS21250: LU632_RS21250 - calcium/sodium antiporter, at 4,057,711 to 4,058,700
_RS21250
LU632_RS21255: kdsD - arabinose-5-phosphate isomerase KdsD, at 4,058,706 to 4,059,692
kdsD
Position (kb) 4057
4058
4059 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4056.775 kb on - strand, within mlaF at 4056.775 kb on - strand, within mlaF at 4056.839 kb on + strand, within mlaF at 4056.840 kb on - strand, within mlaF at 4056.845 kb on + strand, within mlaF at 4056.845 kb on + strand, within mlaF at 4056.928 kb on + strand, within mlaF at 4056.992 kb on - strand, within mlaF at 4057.146 kb on + strand, within mlaF at 4057.146 kb on + strand, within mlaF at 4057.146 kb on + strand, within mlaF at 4057.146 kb on + strand, within mlaF at 4057.194 kb on + strand, within mlaF at 4057.198 kb on + strand, within mlaF at 4057.199 kb on - strand, within mlaF at 4057.237 kb on + strand, within mlaF at 4057.328 kb on - strand, within mlaF at 4057.408 kb on - strand at 4057.408 kb on - strand at 4057.460 kb on - strand at 4057.517 kb on - strand at 4057.532 kb on - strand at 4057.561 kb on + strand at 4057.562 kb on - strand at 4057.562 kb on - strand at 4057.571 kb on + strand at 4057.571 kb on + strand at 4057.572 kb on - strand at 4057.660 kb on - strand at 4057.757 kb on + strand at 4057.759 kb on + strand at 4057.759 kb on + strand at 4057.759 kb on + strand at 4057.782 kb on + strand at 4057.844 kb on + strand, within LU632_RS21250 at 4057.932 kb on - strand, within LU632_RS21250 at 4057.947 kb on + strand, within LU632_RS21250 at 4058.125 kb on + strand, within LU632_RS21250 at 4058.169 kb on + strand, within LU632_RS21250 at 4058.172 kb on + strand, within LU632_RS21250 at 4058.265 kb on + strand, within LU632_RS21250 at 4058.461 kb on + strand, within LU632_RS21250 at 4058.539 kb on + strand, within LU632_RS21250 at 4059.700 kb on + strand at 4059.700 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 4,056,775 - mlaF LU632_RS21245 0.13 -2.8 4,056,775 - mlaF LU632_RS21245 0.13 -3.0 4,056,839 + mlaF LU632_RS21245 0.20 -4.0 4,056,840 - mlaF LU632_RS21245 0.21 -1.8 4,056,845 + mlaF LU632_RS21245 0.21 -2.5 4,056,845 + mlaF LU632_RS21245 0.21 -4.0 4,056,928 + mlaF LU632_RS21245 0.31 -2.3 4,056,992 - mlaF LU632_RS21245 0.39 +0.1 4,057,146 + mlaF LU632_RS21245 0.58 -0.8 4,057,146 + mlaF LU632_RS21245 0.58 -1.9 4,057,146 + mlaF LU632_RS21245 0.58 -2.6 4,057,146 + mlaF LU632_RS21245 0.58 -0.8 4,057,194 + mlaF LU632_RS21245 0.64 -1.9 4,057,198 + mlaF LU632_RS21245 0.65 -0.8 4,057,199 - mlaF LU632_RS21245 0.65 -2.9 4,057,237 + mlaF LU632_RS21245 0.69 -2.2 4,057,328 - mlaF LU632_RS21245 0.81 -2.5 4,057,408 - -2.5 4,057,408 - -2.0 4,057,460 - -0.2 4,057,517 - +0.4 4,057,532 - -1.3 4,057,561 + -0.3 4,057,562 - +0.3 4,057,562 - +0.1 4,057,571 + +2.4 4,057,571 + -0.1 4,057,572 - +2.1 4,057,660 - +0.5 4,057,757 + +0.7 4,057,759 + -0.0 4,057,759 + +1.0 4,057,759 + -0.9 4,057,782 + +0.0 4,057,844 + LU632_RS21250 0.13 -3.1 4,057,932 - LU632_RS21250 0.22 -2.5 4,057,947 + LU632_RS21250 0.24 -0.5 4,058,125 + LU632_RS21250 0.42 -1.5 4,058,169 + LU632_RS21250 0.46 -0.8 4,058,172 + LU632_RS21250 0.47 -0.2 4,058,265 + LU632_RS21250 0.56 -0.2 4,058,461 + LU632_RS21250 0.76 -1.8 4,058,539 + LU632_RS21250 0.84 -1.7 4,059,700 + +1.6 4,059,700 + -0.2
Or see this region's nucleotide sequence