Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20800

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
3,970,041	+		LU632_RS20795	0.55	+0.3
3,970,041	+		LU632_RS20795	0.55	+0.1
3,970,758	+				-0.7
3,971,078	+		LU632_RS20800	0.58	-3.9
3,971,172	+		LU632_RS20800	0.88	-1.3
3,971,173	-		LU632_RS20800	0.89	-0.5
3,971,240	+				+2.1
3,971,413	-		LU632_RS20805	0.85	-3.2
3,971,413	-		LU632_RS20805	0.85	-0.0
3,971,439	-				+0.8
3,971,477	-				-0.3
3,971,500	-				-2.0
3,971,517	-				-2.9
3,971,799	+		LU632_RS20810	0.23	+1.9