Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20780

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS20770 and LU632_RS20775 are separated by 52 nucleotidesLU632_RS20775 and LU632_RS20780 are separated by 97 nucleotidesLU632_RS20780 and LU632_RS20785 are separated by 9 nucleotides LU632_RS20770: LU632_RS20770 - cell wall-binding protein, at 3,965,145 to 3,965,459 _RS20770 LU632_RS20775: LU632_RS20775 - membrane protein, at 3,965,512 to 3,965,937 _RS20775 LU632_RS20780: LU632_RS20780 - hypothetical protein, at 3,966,035 to 3,966,433 _RS20780 LU632_RS20785: LU632_RS20785 - hypothetical protein, at 3,966,443 to 3,968,047 _RS20785 Position (kb) 3966 3967Strain fitness (log2 ratio) -3 -2 -1 0 1at 3965.466 kb on - strandat 3965.868 kb on + strand, within LU632_RS20775at 3966.086 kb on - strand, within LU632_RS20780at 3966.676 kb on + strand, within LU632_RS20785

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
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3,965,466 - -0.9
3,965,868 + LU632_RS20775 0.84 +1.0
3,966,086 - LU632_RS20780 0.13 -3.2
3,966,676 + LU632_RS20785 0.15 -1.8

Or see this region's nucleotide sequence