Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20685

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
3,943,365	+		LU632_RS20680	0.40	-0.8
3,943,365	+		LU632_RS20680	0.40	-2.2
3,943,436	-		LU632_RS20680	0.45	-0.1
3,943,475	+		LU632_RS20680	0.48	-0.0
3,943,475	+		LU632_RS20680	0.48	-2.2
3,943,476	-		LU632_RS20680	0.49	-0.4
3,943,476	-		LU632_RS20680	0.49	+0.9
3,943,497	+		LU632_RS20680	0.50	-1.8
3,943,680	-		LU632_RS20680	0.64	+0.0
3,943,742	+		LU632_RS20680	0.69	-2.2
3,943,750	+		LU632_RS20680	0.70	-1.3
3,943,754	+		LU632_RS20680	0.70	-0.8
3,943,800	+		LU632_RS20680	0.73	-0.5
3,943,822	-		LU632_RS20680	0.75	+0.5
3,943,880	+		LU632_RS20680	0.79	-1.8
3,943,890	+		LU632_RS20680	0.80	-0.2
3,943,891	-		LU632_RS20680	0.80	+0.2
3,943,895	+		LU632_RS20680	0.81	+2.1
3,943,896	-		LU632_RS20680	0.81	-1.0
3,943,897	+		LU632_RS20680	0.81	-2.4
3,943,897	+		LU632_RS20680	0.81	+1.3
3,943,898	-		LU632_RS20680	0.81	+0.9
3,944,026	+				+0.4
3,944,030	-				+0.8
3,944,033	+				-0.7
3,944,127	+				+0.8
3,944,181	+				-1.2
3,944,181	+				-0.0
3,944,182	-				+0.6
3,944,182	-				-1.2
3,944,182	-				-1.2
3,944,187	-				-0.8
3,944,201	-				+0.1
3,944,315	-				-1.9
3,944,315	-				-1.8
3,944,315	-				-0.1
3,944,320	+				-1.8
3,944,321	-				+1.6
3,944,343	-				+0.7
3,944,434	-		LU632_RS20685	0.13	-2.0
3,944,435	+		LU632_RS20685	0.13	+2.9
3,944,436	-		LU632_RS20685	0.13	+0.4
3,944,484	+		LU632_RS20685	0.21	-3.6
3,944,521	+		LU632_RS20685	0.27	-0.1
3,944,527	+		LU632_RS20685	0.28	+0.3
3,944,553	+		LU632_RS20685	0.32	+1.4
3,944,608	+		LU632_RS20685	0.41	+1.1
3,944,624	+		LU632_RS20685	0.43	+1.8
3,944,756	+		LU632_RS20685	0.65	-1.5
3,944,861	+		LU632_RS20685	0.81	-1.8
3,944,861	+		LU632_RS20685	0.81	+0.2
3,944,864	+		LU632_RS20685	0.82	-0.1
3,944,880	+		LU632_RS20685	0.85	+1.6
3,944,933	+				+0.1
3,944,933	+				-1.3
3,944,933	+				-0.8
3,944,934	-				-0.8
3,944,934	-				-0.0
3,944,934	-				+0.2
3,945,046	+				+1.0
3,945,046	+				-2.8
3,945,046	+				-1.2
3,945,046	+				+0.2
3,945,047	-				+0.1
3,945,047	-				+0.7