Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20205

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
3,843,615	+				+0.4
3,843,615	+				+1.1
3,843,615	+				+1.5
3,843,616	-				-0.3
3,843,616	-				-1.1
3,843,616	-				+0.7
3,843,616	-				-0.0
3,843,632	+				+1.8
3,843,633	-				+0.8
3,843,852	+				+1.6
3,843,854	+				-0.2
3,843,854	+				-4.2
3,843,854	+				+0.8
3,843,875	+				+0.8
3,843,875	+				+0.0
3,843,973	+				-1.6
3,843,973	+				-1.2
3,843,974	-				+1.5
3,844,085	+		LU632_RS20205	0.25	-1.8
3,844,086	-		LU632_RS20205	0.25	-3.2
3,844,086	-		LU632_RS20205	0.25	-3.4
3,844,168	+		LU632_RS20205	0.43	-1.3
3,844,169	-		LU632_RS20205	0.43	+3.0
3,844,211	-		LU632_RS20205	0.52	+2.2
3,844,211	-		LU632_RS20205	0.52	+0.4
3,844,256	+		LU632_RS20205	0.62	+2.6
3,844,261	+		LU632_RS20205	0.63	-0.9
3,844,261	+		LU632_RS20205	0.63	+0.2
3,844,262	-		LU632_RS20205	0.64	-3.4
3,844,281	+		LU632_RS20205	0.68	-0.6
3,844,281	+		LU632_RS20205	0.68	+0.6
3,844,282	-		LU632_RS20205	0.68	-1.2
3,844,326	-		LU632_RS20205	0.78	-0.2
3,844,326	-		LU632_RS20205	0.78	+1.1
3,844,327	+		LU632_RS20205	0.78	+0.8
3,844,327	+		LU632_RS20205	0.78	-0.1
3,844,327	+		LU632_RS20205	0.78	-0.4
3,844,327	+		LU632_RS20205	0.78	-0.8
3,844,328	-		LU632_RS20205	0.78	+0.8
3,844,328	-		LU632_RS20205	0.78	+1.3
3,844,334	-		LU632_RS20205	0.79	-0.3
3,844,385	-				+1.5
3,844,407	-				-0.3
3,844,531	+				+2.1
3,844,535	+				-1.4
3,844,535	+				-1.2
3,844,536	-				-0.4
3,844,536	-				-1.4
3,844,536	-				+0.7
3,844,536	-				-0.2
3,844,662	+				-0.9
3,844,663	-				-0.5
3,844,746	-				-2.4
3,844,890	+				+3.3