Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20045

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
3,814,834	+				+3.4
3,814,868	+				+1.1
3,814,869	-				-0.2
3,814,869	-				+2.0
3,814,872	+				-0.8
3,814,927	+				+2.7
3,814,927	+				-0.2
3,814,927	+				-0.0
3,814,927	+				-1.2
3,814,928	-				+1.0
3,814,928	-				-0.2
3,814,928	-				+1.5
3,814,928	-				-1.4
3,815,129	+	fhuB	LU632_RS20045	0.12	+1.3
3,815,277	+	fhuB	LU632_RS20045	0.20	+1.2
3,815,326	+	fhuB	LU632_RS20045	0.22	+0.1
3,815,326	+	fhuB	LU632_RS20045	0.22	+0.5
3,815,327	-	fhuB	LU632_RS20045	0.22	+1.1
3,815,543	-	fhuB	LU632_RS20045	0.33	-3.0
3,815,648	+	fhuB	LU632_RS20045	0.39	-2.4
3,815,874	+	fhuB	LU632_RS20045	0.50	-0.1
3,816,018	+	fhuB	LU632_RS20045	0.58	+0.1
3,816,022	-	fhuB	LU632_RS20045	0.58	+1.4
3,816,022	-	fhuB	LU632_RS20045	0.58	-2.4
3,816,123	-	fhuB	LU632_RS20045	0.63	+0.5
3,816,270	+	fhuB	LU632_RS20045	0.71	-0.4
3,816,311	+	fhuB	LU632_RS20045	0.73	+0.3
3,816,311	+	fhuB	LU632_RS20045	0.73	+3.4
3,816,390	+	fhuB	LU632_RS20045	0.77	+0.4
3,816,391	-	fhuB	LU632_RS20045	0.77	+0.8
3,816,391	-	fhuB	LU632_RS20045	0.77	-2.1
3,816,412	+	fhuB	LU632_RS20045	0.78	+1.6
3,816,563	+	fhuB	LU632_RS20045	0.86	-1.8
3,816,563	+	fhuB	LU632_RS20045	0.86	+1.2
3,816,564	-	fhuB	LU632_RS20045	0.86	+0.8
3,816,564	-	fhuB	LU632_RS20045	0.86	-0.0
3,816,564	-	fhuB	LU632_RS20045	0.86	+1.7
3,816,564	-	fhuB	LU632_RS20045	0.86	-0.9
3,816,564	-	fhuB	LU632_RS20045	0.86	-2.4
3,816,567	+	fhuB	LU632_RS20045	0.86	-0.5
3,816,567	+	fhuB	LU632_RS20045	0.86	+2.0
3,816,568	-	fhuB	LU632_RS20045	0.86	-0.5
3,816,568	-	fhuB	LU632_RS20045	0.86	+0.4
3,816,568	-	fhuB	LU632_RS20045	0.86	+1.4
3,817,277	-	fhuD	LU632_RS20050	0.46	-1.9
3,817,343	+	fhuD	LU632_RS20050	0.53	+0.1
3,817,344	-	fhuD	LU632_RS20050	0.54	-2.2
3,817,429	+	fhuD	LU632_RS20050	0.63	+0.8
3,817,502	-	fhuD	LU632_RS20050	0.71	+1.1
3,817,502	-	fhuD	LU632_RS20050	0.71	-3.0
3,817,743	+				-2.0
3,817,744	-				-2.2
3,817,744	-				-0.1
3,817,791	+				+0.8
3,817,791	+				-0.4
3,817,833	-				-1.8