Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19730

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
3,746,755	-		LU632_RS19720	0.73	-1.0
3,746,997	-				-0.2
3,747,136	+		LU632_RS19725	0.25	+0.8
3,747,245	-		LU632_RS19725	0.44	+0.8
3,747,282	+		LU632_RS19725	0.51	+1.3
3,747,355	+		LU632_RS19725	0.64	-1.6
3,747,355	+		LU632_RS19725	0.64	-2.0
3,747,355	+		LU632_RS19725	0.64	-0.0
3,747,355	+		LU632_RS19725	0.64	-0.8
3,747,393	-		LU632_RS19725	0.70	+1.8
3,747,393	-		LU632_RS19725	0.70	-1.8
3,747,537	+				+0.4
3,747,537	+				-2.3
3,747,611	+				-0.6
3,747,613	+				+0.1
3,747,613	+				-1.6
3,747,613	+				+0.5
3,747,627	+				-0.4
3,748,644	-				+0.3
3,748,650	-				+0.5
3,748,689	+				-3.3
3,748,713	+				+0.1
3,748,713	+				-1.5
3,748,714	-				+0.5
3,748,714	-				+1.8
3,748,793	-				-0.4
3,748,947	+				+2.9
3,749,107	-				+1.1
3,749,128	+				-2.4
3,749,133	-				-2.9
3,749,214	+	mqo	LU632_RS19735	0.12	-1.6
3,749,241	-	mqo	LU632_RS19735	0.14	+0.8
3,749,254	+	mqo	LU632_RS19735	0.15	+0.9
3,749,255	-	mqo	LU632_RS19735	0.15	-0.2
3,749,255	-	mqo	LU632_RS19735	0.15	-0.5
3,749,304	+	mqo	LU632_RS19735	0.18	+0.2