Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19235

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
3,637,134	-				-0.0
3,637,134	-				-0.8
3,637,163	+				+2.2
3,637,198	+				+0.4
3,637,199	-				+0.7
3,637,218	-				+1.2
3,637,223	+				-3.2
3,637,223	+				-0.8
3,637,223	+				-0.3
3,637,224	-				+1.9
3,637,224	-				+0.7
3,637,224	-				-1.3
3,637,368	+		LU632_RS19230	0.46	+0.4
3,637,368	+		LU632_RS19230	0.46	+0.4
3,637,369	-		LU632_RS19230	0.46	+1.3
3,637,492	-		LU632_RS19230	0.88	+1.3
3,637,534	+				+0.4
3,637,553	+				+0.2
3,637,553	+				+2.6
3,637,554	-				-0.5
3,637,554	-				-0.9
3,637,554	-				+0.5
3,637,554	-				+0.8
3,637,628	+				-1.8
3,637,628	+				-2.2
3,637,629	-				+1.6
3,637,675	+				+1.0
3,637,716	+				+0.7
3,637,754	+				+0.7
3,637,755	-				-0.9
3,637,760	+				+0.5
3,637,763	-				-0.3
3,637,763	-				-1.1
3,637,763	-				+0.6
3,637,813	-				+0.5
3,637,946	+				+0.3
3,637,946	+				+0.5
3,637,959	-				-1.4
3,638,037	-	livF	LU632_RS19235	0.13	+0.0
3,638,067	+	livF	LU632_RS19235	0.17	-2.9
3,638,089	+	livF	LU632_RS19235	0.20	-0.8
3,638,090	-	livF	LU632_RS19235	0.20	-1.7
3,638,247	+	livF	LU632_RS19235	0.42	-0.2
3,638,248	-	livF	LU632_RS19235	0.43	+0.7
3,638,248	-	livF	LU632_RS19235	0.43	-0.5
3,638,248	-	livF	LU632_RS19235	0.43	-1.6
3,638,298	-	livF	LU632_RS19235	0.50	+1.2
3,638,369	-	livF	LU632_RS19235	0.60	-2.3
3,638,410	-	livF	LU632_RS19235	0.65	-0.4
3,638,427	+	livF	LU632_RS19235	0.68	-0.3
3,638,428	-	livF	LU632_RS19235	0.68	-1.8
3,638,475	+	livF	LU632_RS19235	0.75	-0.5
3,638,475	+	livF	LU632_RS19235	0.75	+1.6
3,638,488	-	livF	LU632_RS19235	0.76	+0.8
3,638,523	+	livF	LU632_RS19235	0.81	+0.7
3,638,575	-	livF	LU632_RS19235	0.89	-0.5
3,638,577	+	livF	LU632_RS19235	0.89	-0.8
3,638,578	-	livF	LU632_RS19235	0.89	-0.9
3,638,647	-				-0.6
3,638,658	+				+0.9
3,638,658	+				+0.1
3,638,659	-				+0.6
3,638,659	-				+1.0
3,638,659	-				-0.1
3,638,673	+				+1.9
3,638,751	+	livG	LU632_RS19240	0.12	-1.8
3,638,751	+	livG	LU632_RS19240	0.12	-2.1
3,638,751	+	livG	LU632_RS19240	0.12	+0.8
3,638,752	-	livG	LU632_RS19240	0.12	-0.7
3,638,752	-	livG	LU632_RS19240	0.12	+0.1
3,638,752	-	livG	LU632_RS19240	0.12	-2.7
3,638,752	-	livG	LU632_RS19240	0.12	-1.3
3,638,752	-	livG	LU632_RS19240	0.12	-2.1
3,638,785	+	livG	LU632_RS19240	0.17	+1.2
3,638,798	+	livG	LU632_RS19240	0.18	+0.4
3,638,799	-	livG	LU632_RS19240	0.18	-2.9
3,638,841	-	livG	LU632_RS19240	0.24	+1.0
3,638,923	+	livG	LU632_RS19240	0.35	-1.1
3,639,086	+	livG	LU632_RS19240	0.56	+0.7
3,639,087	-	livG	LU632_RS19240	0.56	-0.3
3,639,172	+	livG	LU632_RS19240	0.67	-0.1
3,639,261	+	livG	LU632_RS19240	0.79	-2.4
3,639,281	-	livG	LU632_RS19240	0.81	-0.1
3,639,358	+				-0.6
3,639,358	+				-0.8
3,639,358	+				-2.1
3,639,410	+				-1.4
3,639,511	+				+0.1
3,639,511	+				-2.6
3,639,622	-		LU632_RS19245	0.16	+1.0
3,639,647	-		LU632_RS19245	0.18	+1.3