Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18990

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
3,583,391	+				-0.3
3,583,391	+				-1.3
3,583,391	+				+0.7
3,583,392	-				+0.3
3,583,392	-				-3.2
3,583,392	-				-1.9
3,583,392	-				+1.3
3,583,476	-				+0.1
3,583,482	-				+0.8
3,583,485	+				-0.3
3,583,485	+				-0.4
3,583,498	-				+0.6
3,583,537	-				+0.4
3,583,537	-				-0.5
3,583,537	-				-1.9
3,583,553	+				+0.5
3,583,595	-				-1.2
3,583,636	-				-0.4
3,583,637	+				-0.5
3,583,684	+				-3.3
3,583,741	-				+0.3
3,583,748	+				+0.1
3,583,749	-				+2.7
3,583,806	-				+3.3
3,583,857	-				+2.1
3,585,258	+				-2.6
3,585,259	-				+1.8
3,585,259	-				+0.4
3,585,259	-				+0.5
3,585,277	+				+0.8
3,585,278	-				+2.4
3,585,289	+				-2.3
3,585,294	-				+0.7
3,585,463	-				+0.2
3,585,551	+				-1.6
3,585,552	-				+1.3
3,585,616	+				-1.9
3,585,617	-				-1.3
3,585,775	+	proC	LU632_RS18995	0.24	+1.8
3,585,840	+	proC	LU632_RS18995	0.32	-2.4
3,585,850	+	proC	LU632_RS18995	0.33	-0.3
3,585,986	-	proC	LU632_RS18995	0.50	-1.3
3,586,112	+	proC	LU632_RS18995	0.66	-2.9
3,586,120	+	proC	LU632_RS18995	0.67	+2.4