Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18970

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
3,579,775	+				+3.4
3,579,776	-				-3.5
3,579,776	-				-0.2
3,579,794	+				-4.4
3,579,795	-				-0.3
3,579,796	+				-1.6
3,579,834	+		LU632_RS18965	0.12	-0.1
3,579,886	+		LU632_RS18965	0.18	+1.0
3,579,886	+		LU632_RS18965	0.18	-0.2
3,579,887	-		LU632_RS18965	0.18	+3.9
3,579,973	+		LU632_RS18965	0.29	+1.5
3,579,974	-		LU632_RS18965	0.29	-1.9
3,579,974	-		LU632_RS18965	0.29	-2.3
3,579,974	-		LU632_RS18965	0.29	+0.5
3,579,975	+		LU632_RS18965	0.29	-0.4
3,579,976	-		LU632_RS18965	0.29	+1.1
3,579,976	-		LU632_RS18965	0.29	+2.7
3,579,993	+		LU632_RS18965	0.31	+1.2
3,579,993	+		LU632_RS18965	0.31	-1.3
3,579,993	+		LU632_RS18965	0.31	-0.2
3,579,994	-		LU632_RS18965	0.31	+3.3
3,579,994	-		LU632_RS18965	0.31	-1.0
3,579,994	-		LU632_RS18965	0.31	+1.5
3,579,994	-		LU632_RS18965	0.31	-0.6
3,580,110	+		LU632_RS18965	0.45	-2.0
3,580,111	-		LU632_RS18965	0.45	-0.0
3,580,172	+		LU632_RS18965	0.53	-1.5
3,580,436	-		LU632_RS18965	0.85	-0.9
3,580,477	+				+0.4
3,580,572	+				+1.4
3,580,574	+				+1.6
3,580,574	+				+1.9
3,580,575	-				+0.7
3,580,626	-				-0.3
3,580,633	+				+2.5
3,580,740	+				-0.3
3,580,740	+				-1.6
3,580,740	+				+1.6
3,580,741	-				+1.7
3,580,741	-				-0.0
3,580,783	+		LU632_RS18970	0.21	+0.1
3,580,895	-		LU632_RS18970	0.80	+0.7
3,580,897	+		LU632_RS18970	0.81	+1.7
3,581,004	+				-0.1
3,581,007	-				-3.0
3,581,095	+				-0.9
3,581,096	-				-0.0
3,581,294	-				-0.0
3,581,294	-				+1.5
3,581,296	+				+0.3
3,581,303	+				+0.4
3,581,304	-				+2.5
3,581,340	+	aroL	LU632_RS18975	0.15	+1.6
3,581,340	+	aroL	LU632_RS18975	0.15	+0.9
3,581,340	+	aroL	LU632_RS18975	0.15	+0.2
3,581,340	+	aroL	LU632_RS18975	0.15	-1.7
3,581,340	+	aroL	LU632_RS18975	0.15	-0.2
3,581,341	-	aroL	LU632_RS18975	0.15	-2.7
3,581,341	-	aroL	LU632_RS18975	0.15	-1.3
3,581,469	-	aroL	LU632_RS18975	0.40	+0.9
3,581,469	-	aroL	LU632_RS18975	0.40	-0.3
3,581,469	-	aroL	LU632_RS18975	0.40	+0.1
3,581,490	+	aroL	LU632_RS18975	0.44	-2.0
3,581,494	+	aroL	LU632_RS18975	0.44	-2.0
3,581,495	-	aroL	LU632_RS18975	0.45	+0.7
3,581,495	-	aroL	LU632_RS18975	0.45	-1.9
3,581,495	-	aroL	LU632_RS18975	0.45	-0.3
3,581,607	-	aroL	LU632_RS18975	0.66	+1.7
3,581,744	-				-1.2
3,581,770	-				+1.0
3,581,786	-				-0.1
3,581,786	-				-1.2
3,581,786	-				-2.1
3,581,786	-				+0.3
3,581,842	+				-2.4
3,581,843	-				-1.9
3,581,868	-				+1.6