Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18230

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
3,443,928	+				+0.3
3,443,950	-				+0.3
3,443,950	-				+2.5
3,444,052	+				-2.5
3,444,053	-				+0.6
3,444,101	+				-1.6
3,444,102	-				+0.0
3,444,132	+				+0.9
3,444,148	-		LU632_RS18225	0.11	-0.2
3,444,148	-		LU632_RS18225	0.11	-0.3
3,444,148	-		LU632_RS18225	0.11	+0.1
3,444,236	+		LU632_RS18225	0.21	+0.1
3,444,299	+		LU632_RS18225	0.28	+1.5
3,444,439	-		LU632_RS18225	0.44	-1.0
3,444,449	+		LU632_RS18225	0.45	+0.6
3,444,503	+		LU632_RS18225	0.51	-0.4
3,444,503	+		LU632_RS18225	0.51	+1.2
3,444,504	-		LU632_RS18225	0.52	-0.7
3,444,529	+		LU632_RS18225	0.54	-0.2
3,444,743	+		LU632_RS18225	0.79	+0.5
3,444,756	-		LU632_RS18225	0.80	-2.1
3,444,822	+		LU632_RS18225	0.88	+0.7
3,444,823	-		LU632_RS18225	0.88	-0.5
3,444,823	-		LU632_RS18225	0.88	+0.2
3,444,823	-		LU632_RS18225	0.88	+1.6
3,444,825	-		LU632_RS18225	0.88	+1.0
3,444,863	+				+0.3
3,444,864	-				+0.8
3,444,941	-				+1.2
3,445,029	-		LU632_RS18230	0.12	-0.2
3,445,056	+		LU632_RS18230	0.15	-3.0
3,445,120	+		LU632_RS18230	0.22	-0.1
3,445,196	+		LU632_RS18230	0.31	-0.1
3,445,196	+		LU632_RS18230	0.31	-0.5
3,445,196	+		LU632_RS18230	0.31	+0.6
3,445,197	-		LU632_RS18230	0.31	-0.6
3,445,197	-		LU632_RS18230	0.31	+0.2
3,445,200	-		LU632_RS18230	0.32	+0.4
3,445,312	+		LU632_RS18230	0.45	+1.6
3,445,326	+		LU632_RS18230	0.46	-0.5
3,445,326	+		LU632_RS18230	0.46	-1.1
3,445,448	+		LU632_RS18230	0.60	+0.1
3,445,550	+		LU632_RS18230	0.72	-1.1
3,445,551	-		LU632_RS18230	0.72	+0.6
3,445,686	-		LU632_RS18230	0.88	-2.7
3,445,689	-		LU632_RS18230	0.88	+0.6
3,445,800	+				-3.1
3,445,801	-				+3.0
3,445,815	+				-0.2
3,445,816	-				-0.3
3,445,816	-				+0.4
3,445,816	-				-0.1
3,445,819	-				+3.9
3,445,833	+				-2.4
3,445,834	-				+0.0
3,445,842	+				-1.7
3,445,843	-				-1.7
3,446,027	-		LU632_RS18235	0.34	+0.9
3,446,029	+		LU632_RS18235	0.34	+1.0
3,446,032	+		LU632_RS18235	0.34	+0.8
3,446,127	+		LU632_RS18235	0.48	+0.5
3,446,297	+		LU632_RS18235	0.73	+0.8
3,446,297	+		LU632_RS18235	0.73	+0.7
3,446,297	+		LU632_RS18235	0.73	-0.1
3,446,302	-		LU632_RS18235	0.74	-1.7
3,446,302	-		LU632_RS18235	0.74	-1.7
3,446,359	-		LU632_RS18235	0.82	-1.2
3,446,433	+				+2.0
3,446,442	+				-1.5
3,446,498	-				+0.3
3,446,507	+				+0.8
3,446,507	+				+0.8
3,446,507	+				-2.2
3,446,508	-				-0.2
3,446,569	-				+0.3
3,446,632	+				+1.0
3,446,720	+				-0.6
3,446,769	-				+0.4