Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18010

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
3,401,506	-		LU632_RS18005	0.49	+0.6
3,401,584	+		LU632_RS18005	0.55	-2.4
3,401,630	+		LU632_RS18005	0.59	-1.0
3,401,631	-		LU632_RS18005	0.59	+0.6
3,401,733	-		LU632_RS18005	0.67	-0.2
3,401,740	+		LU632_RS18005	0.67	-2.4
3,401,741	-		LU632_RS18005	0.68	-4.1
3,401,813	-		LU632_RS18005	0.73	-1.2
3,401,883	-		LU632_RS18005	0.79	-2.8
3,401,897	-		LU632_RS18005	0.80	-2.0
3,401,947	+		LU632_RS18005	0.84	-1.4
3,402,045	+				-1.2
3,402,069	-				-1.3
3,402,233	+				+0.3
3,402,233	+				+1.8
3,402,234	-				-0.6
3,402,322	+				-0.8
3,402,445	+				-1.0
3,402,445	+				-0.3
3,402,446	-				+0.2
3,402,446	-				+1.2
3,402,449	+				+0.6
3,402,449	+				+3.2
3,402,449	+				-1.0
3,402,465	+				+2.0
3,402,465	+				+0.5
3,402,468	+				+0.8
3,402,529	+				-1.4
3,402,530	-				+2.2
3,402,599	+				-0.4
3,402,650	-		LU632_RS18010	0.12	-1.1
3,402,650	-		LU632_RS18010	0.12	+1.6
3,402,710	+		LU632_RS18010	0.16	+0.1
3,402,711	-		LU632_RS18010	0.16	+2.3
3,402,711	-		LU632_RS18010	0.16	+0.0
3,402,711	-		LU632_RS18010	0.16	-0.9
3,402,731	+		LU632_RS18010	0.17	+3.3
3,402,828	-		LU632_RS18010	0.23	-0.4
3,402,865	+		LU632_RS18010	0.25	+0.3
3,402,873	-		LU632_RS18010	0.26	+0.4
3,403,001	+		LU632_RS18010	0.34	-0.5
3,403,017	-		LU632_RS18010	0.35	-0.4
3,403,017	-		LU632_RS18010	0.35	-1.2
3,403,017	-		LU632_RS18010	0.35	+0.6
3,403,018	+		LU632_RS18010	0.35	-2.4
3,403,035	+		LU632_RS18010	0.36	-1.4
3,403,062	+		LU632_RS18010	0.38	+0.9
3,403,067	-		LU632_RS18010	0.38	-0.4
3,403,114	+		LU632_RS18010	0.41	-2.0
3,403,114	+		LU632_RS18010	0.41	-0.4
3,403,114	+		LU632_RS18010	0.41	-1.0
3,403,115	-		LU632_RS18010	0.41	+0.2
3,403,115	-		LU632_RS18010	0.41	+1.2
3,403,129	-		LU632_RS18010	0.42	+1.4
3,403,129	-		LU632_RS18010	0.42	+0.1
3,403,179	-		LU632_RS18010	0.45	+0.4
3,403,217	+		LU632_RS18010	0.47	-0.4
3,403,218	-		LU632_RS18010	0.47	+0.4
3,403,218	-		LU632_RS18010	0.47	+3.2
3,403,280	-		LU632_RS18010	0.51	-0.2
3,403,445	-		LU632_RS18010	0.62	+0.4
3,403,445	-		LU632_RS18010	0.62	-1.7
3,403,460	+		LU632_RS18010	0.63	-1.7
3,403,579	+		LU632_RS18010	0.70	+1.8
3,403,579	+		LU632_RS18010	0.70	+2.2
3,403,580	-		LU632_RS18010	0.70	+2.1
3,403,580	-		LU632_RS18010	0.70	+0.6
3,403,580	-		LU632_RS18010	0.70	-0.4
3,403,580	-		LU632_RS18010	0.70	-0.6
3,403,583	+		LU632_RS18010	0.70	-2.0
3,403,583	+		LU632_RS18010	0.70	+1.1
3,403,585	+		LU632_RS18010	0.70	-1.7
3,403,585	+		LU632_RS18010	0.70	-2.8
3,403,586	-		LU632_RS18010	0.70	-0.4
3,403,586	-		LU632_RS18010	0.70	-0.5
3,403,586	-		LU632_RS18010	0.70	+0.8
3,403,728	+		LU632_RS18010	0.79	+1.0
3,403,753	-		LU632_RS18010	0.81	-2.4
3,403,838	+		LU632_RS18010	0.86	-1.2
3,403,871	+		LU632_RS18010	0.88	+1.7
3,403,872	-		LU632_RS18010	0.88	+1.1
3,403,915	+				+0.6
3,404,127	-				+1.5
3,404,164	-				+0.2
3,404,168	-				+0.2
3,404,478	+				+0.7
3,404,528	+				-0.4
3,404,529	-				-2.2
3,404,546	+				+0.2
3,404,702	-				+1.1
3,404,783	+				-1.3
3,404,783	+				+1.1
3,404,784	-				+0.9
3,404,867	-				-0.4