Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17860

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
3,369,248	+				+0.3
3,369,262	+				-1.0
3,369,262	+				+0.5
3,369,335	-				-1.2
3,369,358	-				+1.0
3,369,369	+				-2.4
3,369,370	-				-1.5
3,369,566	+	sseA	LU632_RS17855	0.33	-1.0
3,369,566	+	sseA	LU632_RS17855	0.33	-1.1
3,369,566	+	sseA	LU632_RS17855	0.33	+0.0
3,369,566	+	sseA	LU632_RS17855	0.33	-0.5
3,369,566	+	sseA	LU632_RS17855	0.33	+0.1
3,369,567	-	sseA	LU632_RS17855	0.33	-1.5
3,369,567	-	sseA	LU632_RS17855	0.33	-1.4
3,369,568	+	sseA	LU632_RS17855	0.33	-0.3
3,369,569	-	sseA	LU632_RS17855	0.33	+1.1
3,369,569	-	sseA	LU632_RS17855	0.33	-0.5
3,369,748	-	sseA	LU632_RS17855	0.54	-0.7
3,369,762	+	sseA	LU632_RS17855	0.56	-3.0
3,369,770	+	sseA	LU632_RS17855	0.57	+1.5
3,369,770	+	sseA	LU632_RS17855	0.57	-0.2
3,369,771	-	sseA	LU632_RS17855	0.57	+0.2
3,369,930	-	sseA	LU632_RS17855	0.76	-0.4
3,370,047	+	sseA	LU632_RS17855	0.89	-0.1
3,370,047	+	sseA	LU632_RS17855	0.89	+1.0
3,370,048	-	sseA	LU632_RS17855	0.89	-0.2
3,370,048	-	sseA	LU632_RS17855	0.89	+2.2
3,370,147	-				-0.4
3,370,147	-				+0.5
3,370,217	+				-1.4
3,370,218	-				-2.5
3,370,351	-	sseB	LU632_RS17860	0.14	+2.5
3,370,351	-	sseB	LU632_RS17860	0.14	-2.0
3,370,382	+	sseB	LU632_RS17860	0.18	+0.4
3,370,488	-	sseB	LU632_RS17860	0.32	-2.4
3,370,499	+	sseB	LU632_RS17860	0.33	-0.2
3,370,520	+	sseB	LU632_RS17860	0.36	-0.1
3,370,522	+	sseB	LU632_RS17860	0.36	-1.0
3,370,523	-	sseB	LU632_RS17860	0.36	+1.1
3,370,541	+	sseB	LU632_RS17860	0.39	-1.0
3,370,541	+	sseB	LU632_RS17860	0.39	+0.7
3,370,673	+	sseB	LU632_RS17860	0.56	+0.9
3,370,855	-	sseB	LU632_RS17860	0.79	-0.4
3,371,006	+				+0.6
3,371,049	+				+0.9
3,371,049	+				-2.0
3,371,106	+				+4.2
3,371,107	-				+0.7
3,371,170	-				+0.2
3,371,265	+	pepB	LU632_RS17865	0.13	-1.0
3,371,265	+	pepB	LU632_RS17865	0.13	+1.1
3,371,304	+	pepB	LU632_RS17865	0.17	+0.6
3,371,381	-	pepB	LU632_RS17865	0.23	+0.6
3,371,427	-	pepB	LU632_RS17865	0.26	-1.6
3,371,626	-	pepB	LU632_RS17865	0.42	-1.4
3,371,626	-	pepB	LU632_RS17865	0.42	+0.2
3,371,645	+	pepB	LU632_RS17865	0.43	+0.0
3,371,742	+	pepB	LU632_RS17865	0.51	+1.8
3,371,758	-	pepB	LU632_RS17865	0.52	-2.7
3,371,763	+	pepB	LU632_RS17865	0.52	-1.4
3,371,764	-	pepB	LU632_RS17865	0.52	+0.6
3,371,764	-	pepB	LU632_RS17865	0.52	-1.5
3,371,764	-	pepB	LU632_RS17865	0.52	-2.2
3,371,785	-	pepB	LU632_RS17865	0.54	+0.8
3,371,787	+	pepB	LU632_RS17865	0.54	+0.3
3,371,787	+	pepB	LU632_RS17865	0.54	-2.4
3,371,788	-	pepB	LU632_RS17865	0.54	+4.3
3,371,906	+	pepB	LU632_RS17865	0.63	+0.6
3,371,907	-	pepB	LU632_RS17865	0.63	+2.9
3,371,907	-	pepB	LU632_RS17865	0.63	+0.3
3,371,907	-	pepB	LU632_RS17865	0.63	+0.8
3,371,945	+	pepB	LU632_RS17865	0.66	+2.6
3,371,946	-	pepB	LU632_RS17865	0.67	+0.8