Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17685

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
3,320,632	+				+0.8
3,320,632	+				+1.4
3,320,665	+				+2.8
3,320,665	+				+0.3
3,320,666	-				+0.3
3,320,666	-				-1.0
3,320,666	-				-0.2
3,320,666	-				-0.5
3,320,666	-				+1.5
3,320,691	+	tssG	LU632_RS17680	0.12	-3.3
3,320,691	+	tssG	LU632_RS17680	0.12	+0.7
3,320,691	+	tssG	LU632_RS17680	0.12	+0.4
3,320,692	-	tssG	LU632_RS17680	0.12	+0.6
3,320,692	-	tssG	LU632_RS17680	0.12	-2.7
3,320,692	-	tssG	LU632_RS17680	0.12	-2.0
3,320,848	+	tssG	LU632_RS17680	0.28	-1.9
3,320,849	-	tssG	LU632_RS17680	0.28	-1.0
3,320,968	+	tssG	LU632_RS17680	0.39	-1.0
3,320,968	+	tssG	LU632_RS17680	0.39	+2.3
3,320,968	+	tssG	LU632_RS17680	0.39	+1.0
3,320,968	+	tssG	LU632_RS17680	0.39	-1.1
3,320,969	+	tssG	LU632_RS17680	0.39	+0.8
3,320,969	-	tssG	LU632_RS17680	0.39	-1.7
3,320,969	-	tssG	LU632_RS17680	0.39	+0.0
3,320,969	-	tssG	LU632_RS17680	0.39	-1.4
3,321,016	+	tssG	LU632_RS17680	0.44	-1.3
3,321,017	-	tssG	LU632_RS17680	0.44	+1.9
3,321,017	-	tssG	LU632_RS17680	0.44	-2.6
3,321,017	-	tssG	LU632_RS17680	0.44	-0.4
3,321,017	-	tssG	LU632_RS17680	0.44	-1.4
3,321,065	+	tssG	LU632_RS17680	0.49	+0.9
3,321,065	+	tssG	LU632_RS17680	0.49	-1.3
3,321,066	-	tssG	LU632_RS17680	0.49	+1.3
3,321,089	-	tssG	LU632_RS17680	0.51	-1.7
3,321,197	-	tssG	LU632_RS17680	0.62	-2.9
3,321,197	-	tssG	LU632_RS17680	0.62	-0.5
3,321,246	+	tssG	LU632_RS17680	0.66	+1.6
3,321,246	+	tssG	LU632_RS17680	0.66	-0.9
3,321,246	+	tssG	LU632_RS17680	0.66	-1.0
3,321,246	+	tssG	LU632_RS17680	0.66	+2.9
3,321,247	-	tssG	LU632_RS17680	0.67	+0.1
3,321,247	-	tssG	LU632_RS17680	0.67	+1.0
3,321,247	-	tssG	LU632_RS17680	0.67	-0.4
3,321,249	-	tssG	LU632_RS17680	0.67	+0.2
3,321,289	-	tssG	LU632_RS17680	0.71	+1.2
3,321,289	-	tssG	LU632_RS17680	0.71	+0.6
3,321,342	+	tssG	LU632_RS17680	0.76	-1.9
3,321,343	-	tssG	LU632_RS17680	0.76	+3.2
3,321,397	-	tssG	LU632_RS17680	0.81	-1.4
3,321,398	-	tssG	LU632_RS17680	0.81	+1.0
3,321,510	+				+0.3
3,321,510	+				+0.5
3,321,510	+				+0.8
3,321,511	-				+0.6
3,321,511	-				-1.7
3,321,513	+				-0.6
3,321,514	-				-1.0
3,321,921	+	tagH	LU632_RS17685	0.24	+0.4
3,321,921	+	tagH	LU632_RS17685	0.24	-1.4
3,321,925	+	tagH	LU632_RS17685	0.24	-0.9
3,321,926	-	tagH	LU632_RS17685	0.24	+0.5
3,321,926	-	tagH	LU632_RS17685	0.24	+0.6
3,321,934	-	tagH	LU632_RS17685	0.25	-0.0
3,321,937	+	tagH	LU632_RS17685	0.25	+1.2
3,322,015	-	tagH	LU632_RS17685	0.31	+0.3
3,322,015	-	tagH	LU632_RS17685	0.31	+0.6
3,322,086	-	tagH	LU632_RS17685	0.37	+0.6
3,322,086	-	tagH	LU632_RS17685	0.37	-0.6
3,322,086	-	tagH	LU632_RS17685	0.37	+1.3
3,322,153	+	tagH	LU632_RS17685	0.42	+1.4
3,322,153	+	tagH	LU632_RS17685	0.42	-0.4
3,322,244	+	tagH	LU632_RS17685	0.49	-0.4
3,322,244	+	tagH	LU632_RS17685	0.49	+1.6
3,322,244	+	tagH	LU632_RS17685	0.49	+2.6
3,322,245	-	tagH	LU632_RS17685	0.49	-1.5
3,322,245	-	tagH	LU632_RS17685	0.49	-0.2
3,322,245	-	tagH	LU632_RS17685	0.49	+3.1
3,322,245	-	tagH	LU632_RS17685	0.49	+2.9
3,322,322	+	tagH	LU632_RS17685	0.55	+1.6
3,322,344	+	tagH	LU632_RS17685	0.57	+0.0
3,322,453	-	tagH	LU632_RS17685	0.65	+0.7
3,322,505	-	tagH	LU632_RS17685	0.69	+0.8
3,322,577	+	tagH	LU632_RS17685	0.75	+1.5
3,322,577	+	tagH	LU632_RS17685	0.75	+0.3
3,322,775	+				-1.4
3,322,775	+				+1.1
3,322,775	+				-1.0
3,322,775	+				-1.8
3,322,776	-				-0.7
3,322,776	-				+0.5
3,322,776	-				+0.2
3,322,776	-				-0.4
3,322,776	-				-0.0
3,322,776	-				+0.1
3,322,776	-				+0.7
3,322,844	+				-1.1
3,322,844	+				+0.2
3,322,845	-				-2.9
3,322,845	-				+0.2
3,322,857	-				-0.7
3,322,892	-				-2.0
3,323,204	-	tssJ	LU632_RS17690	0.56	-2.2
3,323,204	-	tssJ	LU632_RS17690	0.56	-1.7
3,323,204	-	tssJ	LU632_RS17690	0.56	-1.4
3,323,222	-	tssJ	LU632_RS17690	0.60	-0.0
3,323,244	+	tssJ	LU632_RS17690	0.64	+1.8
3,323,284	+	tssJ	LU632_RS17690	0.72	-4.2
3,323,284	+	tssJ	LU632_RS17690	0.72	+0.6
3,323,284	+	tssJ	LU632_RS17690	0.72	+1.2
3,323,285	-	tssJ	LU632_RS17690	0.72	+0.2
3,323,306	-	tssJ	LU632_RS17690	0.76	-0.0
3,323,348	+	tssJ	LU632_RS17690	0.84	-1.4
3,323,348	+	tssJ	LU632_RS17690	0.84	+1.7
3,323,368	+	tssJ	LU632_RS17690	0.88	-2.2
3,323,376	-				-1.3
3,323,462	+				+0.4
3,323,503	-				+1.8
3,323,520	+				-1.9
3,323,538	+				-1.2
3,323,538	+				-0.7
3,323,574	-	tssK	LU632_RS17695	0.11	-0.7
3,323,610	+	tssK	LU632_RS17695	0.13	+1.0
3,323,611	-	tssK	LU632_RS17695	0.14	-2.6
3,323,611	-	tssK	LU632_RS17695	0.14	+1.8
3,323,725	+	tssK	LU632_RS17695	0.22	+2.5
3,323,725	+	tssK	LU632_RS17695	0.22	-1.7
3,323,726	-	tssK	LU632_RS17695	0.22	+1.0
3,323,895	+	tssK	LU632_RS17695	0.35	+0.5
3,323,895	+	tssK	LU632_RS17695	0.35	+0.4
3,323,896	-	tssK	LU632_RS17695	0.35	+1.3
3,323,896	-	tssK	LU632_RS17695	0.35	+1.0