Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16340

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntleuS and lptE are separated by 14 nucleotideslptE and holA overlap by 4 nucleotides LU632_RS16335: leuS - leucine--tRNA ligase, at 3,090,426 to 3,093,008 leuS LU632_RS16340: lptE - LPS assembly lipoprotein LptE, at 3,093,023 to 3,093,619 lptE LU632_RS16345: holA - DNA polymerase III subunit delta, at 3,093,616 to 3,094,647 holA Position (kb) 3093 3094Strain fitness (log2 ratio) -3 -2 -1 0 1at 3093.505 kb on + strand, within lptEat 3093.541 kb on + strand, within lptE

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
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3,093,505 + lptE LU632_RS16340 0.81 -2.6
3,093,541 + lptE LU632_RS16340 0.87 -3.2

Or see this region's nucleotide sequence