Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16210

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
3,064,042	+		LU632_RS16205	0.42	-0.3
3,064,043	-		LU632_RS16205	0.42	-1.0
3,064,118	+		LU632_RS16205	0.62	+1.1
3,064,118	+		LU632_RS16205	0.62	+0.4
3,064,119	-		LU632_RS16205	0.62	+1.3
3,064,119	-		LU632_RS16205	0.62	+1.0
3,064,119	-		LU632_RS16205	0.62	+2.0
3,064,119	-		LU632_RS16205	0.62	+1.1
3,064,137	+		LU632_RS16205	0.67	-2.8
3,064,147	+		LU632_RS16205	0.70	+0.6
3,064,190	+		LU632_RS16205	0.81	+0.7
3,064,191	-		LU632_RS16205	0.81	-0.5
3,064,191	-		LU632_RS16205	0.81	+0.6
3,064,305	-				+0.6
3,064,384	+				-3.3
3,064,385	-				-0.9
3,064,489	-				-2.5
3,064,521	+				-0.5
3,064,521	+				+0.9
3,064,522	-				+1.5
3,064,540	+				-1.1
3,064,541	-				+0.3
3,064,544	+				-0.8
3,064,545	-				-0.5
3,064,692	-				+0.3
3,064,706	-				+0.4
3,064,706	-				+0.5
3,064,808	+				-0.5
3,064,808	+				+1.2
3,064,808	+				-0.6
3,064,808	+				-2.5
3,064,812	-				-0.9
3,064,882	+				+1.5
3,064,882	+				+1.4
3,064,882	+				+0.5
3,064,883	-				-0.4
3,064,883	-				+0.1
3,064,888	+				-2.8
3,064,888	+				+0.4
3,065,090	-		LU632_RS16210	0.87	+1.1
3,065,125	+				+0.9
3,065,126	+				+1.4
3,065,127	-				+1.2
3,065,130	+				+0.5
3,065,159	+				-0.5
3,065,182	+				-3.7
3,065,196	+				-1.1
3,065,197	-				-1.1
3,065,197	-				-1.5
3,065,259	-				-0.1
3,065,329	-		LU632_RS16215	0.14	-0.4
3,065,372	-		LU632_RS16215	0.21	+1.0
3,065,402	+		LU632_RS16215	0.27	-2.3
3,065,451	+		LU632_RS16215	0.36	-2.5
3,065,488	-		LU632_RS16215	0.42	+1.1
3,065,610	-		LU632_RS16215	0.64	-0.6
3,065,632	-		LU632_RS16215	0.68	+0.9
3,065,656	-		LU632_RS16215	0.73	+1.4
3,065,730	-		LU632_RS16215	0.86	+0.6
3,065,733	+		LU632_RS16215	0.86	+1.3
3,065,734	-		LU632_RS16215	0.87	+2.7
3,065,847	+				-2.8
3,065,847	+				+0.1
3,065,847	+				+0.2
3,065,848	-				+0.4
3,065,931	+				-2.1
3,066,077	+		LU632_RS16220	0.11	+1.2
3,066,078	-		LU632_RS16220	0.11	+0.9
3,066,097	-		LU632_RS16220	0.12	+0.1