Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15910

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
3,006,415	-	galT	LU632_RS15905	0.20	+0.5
3,006,558	-	galT	LU632_RS15905	0.33	-4.1
3,006,763	+	galT	LU632_RS15905	0.53	-1.0
3,006,764	-	galT	LU632_RS15905	0.53	-3.3
3,006,775	-	galT	LU632_RS15905	0.54	-1.1
3,006,931	+	galT	LU632_RS15905	0.69	-3.7
3,007,065	-	galT	LU632_RS15905	0.82	-1.2
3,007,065	-	galT	LU632_RS15905	0.82	-2.1
3,007,065	-	galT	LU632_RS15905	0.82	-1.0
3,007,230	-				-2.1
3,007,267	-				+1.0
3,007,321	+				+0.5
3,007,321	+				-1.5
3,007,322	-				-1.3
3,007,373	-				-1.3
3,007,373	-				-0.3
3,007,373	-				-0.5
3,007,373	-				-1.7
3,007,541	+	galK	LU632_RS15910	0.25	+1.5
3,007,542	-	galK	LU632_RS15910	0.25	-1.0
3,007,542	-	galK	LU632_RS15910	0.25	-1.3
3,007,542	-	galK	LU632_RS15910	0.25	-0.5
3,007,600	+	galK	LU632_RS15910	0.30	-2.3
3,007,786	-	galK	LU632_RS15910	0.46	-0.5
3,007,925	+	galK	LU632_RS15910	0.58	+0.5
3,007,926	-	galK	LU632_RS15910	0.58	-3.3
3,007,926	-	galK	LU632_RS15910	0.58	-5.3
3,008,197	+	galK	LU632_RS15910	0.82	-0.8
3,008,336	+				-1.2
3,008,337	-				-1.9
3,008,337	-				-0.9
3,008,357	-				+0.7
3,008,369	+				+1.4
3,008,369	+				-0.1
3,008,454	+				-2.3
3,008,455	-				-0.8
3,008,584	+	galM	LU632_RS15915	0.18	+0.3
3,008,584	+	galM	LU632_RS15915	0.18	+1.2
3,008,584	+	galM	LU632_RS15915	0.18	-1.8
3,008,637	+	galM	LU632_RS15915	0.23	-2.5
3,008,699	+	galM	LU632_RS15915	0.29	+2.6
3,008,700	-	galM	LU632_RS15915	0.29	-2.5
3,008,700	-	galM	LU632_RS15915	0.29	-1.4
3,008,831	+	galM	LU632_RS15915	0.41	+0.9
3,008,831	+	galM	LU632_RS15915	0.41	-1.5
3,008,862	+	galM	LU632_RS15915	0.44	-1.5
3,008,930	-	galM	LU632_RS15915	0.51	-0.5
3,008,982	-	galM	LU632_RS15915	0.56	-3.2
3,008,982	-	galM	LU632_RS15915	0.56	+2.6
3,009,222	+	galM	LU632_RS15915	0.79	-1.7
3,009,293	+	galM	LU632_RS15915	0.86	-1.5
3,009,293	+	galM	LU632_RS15915	0.86	-1.1
3,009,294	-	galM	LU632_RS15915	0.86	+0.3
3,009,294	-	galM	LU632_RS15915	0.86	+1.2
3,009,294	-	galM	LU632_RS15915	0.86	-0.4