Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14750

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
2,803,938	+				+0.7
2,804,000	+				-2.4
2,804,037	-				-1.3
2,804,509	+		LU632_RS14745	0.61	+1.3
2,804,867	+				+0.1
2,804,869	+				-1.6
2,804,919	-				+0.7
2,804,997	+	ycfP	LU632_RS14750	0.18	+2.1
2,805,134	+	ycfP	LU632_RS14750	0.42	+2.0
2,805,134	+	ycfP	LU632_RS14750	0.42	-0.4
2,805,134	+	ycfP	LU632_RS14750	0.42	-1.0
2,805,135	-	ycfP	LU632_RS14750	0.43	-0.1
2,805,135	-	ycfP	LU632_RS14750	0.43	+1.0
2,805,135	-	ycfP	LU632_RS14750	0.43	-0.9
2,805,135	-	ycfP	LU632_RS14750	0.43	+0.8
2,805,165	+	ycfP	LU632_RS14750	0.48	-2.1
2,805,166	-	ycfP	LU632_RS14750	0.48	-2.1
2,805,166	-	ycfP	LU632_RS14750	0.48	+0.4
2,805,166	-	ycfP	LU632_RS14750	0.48	-1.6
2,805,250	+	ycfP	LU632_RS14750	0.63	+1.9
2,805,330	+	ycfP	LU632_RS14750	0.77	+1.6
2,805,330	+	ycfP	LU632_RS14750	0.77	-0.9
2,805,330	+	ycfP	LU632_RS14750	0.77	+2.0
2,805,356	+	ycfP	LU632_RS14750	0.82	-0.6
2,805,360	+	ycfP	LU632_RS14750	0.83	+0.5
2,805,370	+	ycfP	LU632_RS14750	0.84	-0.6
2,805,371	-	ycfP	LU632_RS14750	0.85	-2.1
2,805,371	-	ycfP	LU632_RS14750	0.85	-3.4
2,805,447	-				-0.6
2,805,447	-				-1.4
2,805,451	+				+2.8
2,805,452	-				-3.3
2,805,597	+	nagZ	LU632_RS14755	0.11	+1.9
2,805,597	+	nagZ	LU632_RS14755	0.11	-1.3
2,805,598	-	nagZ	LU632_RS14755	0.11	+1.3
2,805,598	-	nagZ	LU632_RS14755	0.11	+0.2
2,805,598	-	nagZ	LU632_RS14755	0.11	-3.1
2,805,638	-	nagZ	LU632_RS14755	0.15	-2.6
2,805,726	+	nagZ	LU632_RS14755	0.23	-1.4
2,805,727	-	nagZ	LU632_RS14755	0.24	-4.0
2,805,791	+	nagZ	LU632_RS14755	0.30	-0.6
2,805,792	-	nagZ	LU632_RS14755	0.30	-0.6
2,805,815	-	nagZ	LU632_RS14755	0.32	+0.4
2,805,847	+	nagZ	LU632_RS14755	0.35	-0.9
2,805,856	+	nagZ	LU632_RS14755	0.36	-1.3
2,805,856	+	nagZ	LU632_RS14755	0.36	-1.9
2,805,857	-	nagZ	LU632_RS14755	0.36	+1.8
2,805,861	+	nagZ	LU632_RS14755	0.37	+0.4
2,805,862	-	nagZ	LU632_RS14755	0.37	-1.1
2,805,866	-	nagZ	LU632_RS14755	0.37	-1.0
2,805,866	-	nagZ	LU632_RS14755	0.37	-2.6
2,805,866	-	nagZ	LU632_RS14755	0.37	+0.4
2,805,866	-	nagZ	LU632_RS14755	0.37	-2.1
2,805,866	-	nagZ	LU632_RS14755	0.37	-2.1
2,805,922	+	nagZ	LU632_RS14755	0.42	+0.4
2,806,061	-	nagZ	LU632_RS14755	0.56	-1.4
2,806,145	+	nagZ	LU632_RS14755	0.64	+0.8
2,806,166	-	nagZ	LU632_RS14755	0.66	-3.1
2,806,405	+	nagZ	LU632_RS14755	0.89	-2.6
2,806,405	+	nagZ	LU632_RS14755	0.89	+0.4
2,806,420	+				-2.4
2,806,431	-				+1.7