Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14500

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
2,760,644	+				-0.2
2,760,644	+				-0.1
2,760,644	+				+1.1
2,760,644	+				-0.9
2,760,670	-				+0.5
2,760,679	+				+0.4
2,760,762	+		LU632_RS14495	0.29	-1.6
2,760,762	+		LU632_RS14495	0.29	+0.8
2,760,762	+		LU632_RS14495	0.29	+1.7
2,760,763	-		LU632_RS14495	0.29	-0.4
2,760,763	-		LU632_RS14495	0.29	-0.6
2,760,763	-		LU632_RS14495	0.29	-0.8
2,760,763	-		LU632_RS14495	0.29	+2.0
2,760,763	-		LU632_RS14495	0.29	-0.1
2,760,763	-		LU632_RS14495	0.29	-3.3
2,761,016	+		LU632_RS14500	0.38	+0.7
2,761,016	+		LU632_RS14500	0.38	+4.9
2,761,017	-		LU632_RS14500	0.38	-2.2
2,761,111	-		LU632_RS14500	0.82	-1.4
2,761,115	-		LU632_RS14500	0.84	-0.1
2,761,115	-		LU632_RS14500	0.84	+0.1
2,761,115	-		LU632_RS14500	0.84	-1.3
2,761,169	-				-0.3
2,761,264	+				+1.0
2,761,265	-				-0.2
2,761,322	+				+0.2
2,761,398	+				+0.4
2,761,447	-				-0.9
2,761,447	-				+0.5
2,761,447	-				+4.2
2,761,533	+		LU632_RS14505	0.23	+2.5
2,761,533	+		LU632_RS14505	0.23	-2.4
2,761,657	+		LU632_RS14505	0.56	+1.0
2,761,658	-		LU632_RS14505	0.57	-0.2
2,761,865	-				+0.2
2,761,897	-				-0.2
2,761,947	+				-0.4
2,762,093	-		LU632_RS14510	0.26	-0.3
2,762,124	+		LU632_RS14510	0.30	+1.2
2,762,125	-		LU632_RS14510	0.30	+2.2
2,762,139	+		LU632_RS14510	0.32	-0.7