Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13950

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
2,672,907	+		LU632_RS13945	0.38	-2.7
2,673,054	-		LU632_RS13945	0.53	-2.6
2,673,055	-		LU632_RS13945	0.54	+0.1
2,673,090	+		LU632_RS13945	0.57	-1.9
2,673,092	+		LU632_RS13945	0.57	-1.9
2,673,092	+		LU632_RS13945	0.57	-1.2
2,673,092	-		LU632_RS13945	0.57	+0.4
2,673,208	-		LU632_RS13945	0.69	+0.7
2,673,379	+		LU632_RS13945	0.87	+2.2
2,673,432	+				+1.4
2,673,432	+				+3.8
2,673,433	-				-2.6
2,673,514	+				-2.6
2,673,514	+				+1.0
2,673,515	-				-0.3
2,673,586	+				+0.8
2,673,587	-				-1.8
2,673,603	+				-0.6
2,673,603	+				+2.4
2,673,604	-				+1.0
2,673,604	-				+1.4
2,673,606	-				+0.4
2,673,606	-				+0.8
2,673,690	+				-2.9
2,673,799	+				-2.4
2,673,812	-	ychF	LU632_RS13950	0.11	-1.9
2,674,304	+	ychF	LU632_RS13950	0.56	-1.0
2,674,304	+	ychF	LU632_RS13950	0.56	-1.9
2,674,305	-	ychF	LU632_RS13950	0.56	+1.0
2,674,658	-	ychF	LU632_RS13950	0.88	-0.6
2,674,673	+	ychF	LU632_RS13950	0.90	-2.7
2,674,674	-	ychF	LU632_RS13950	0.90	-1.6
2,674,674	-	ychF	LU632_RS13950	0.90	-1.9
2,674,683	-				-3.9
2,674,684	+				-2.6
2,674,684	+				-1.2
2,674,684	+				-0.6
2,674,685	-				+0.4
2,674,742	-				+0.4
2,674,784	+				+0.9
2,674,789	-				-2.0
2,674,838	-				-1.2
2,674,867	-				+0.9
2,674,896	+				-2.1
2,674,898	+				+0.6
2,674,899	-				-2.0
2,674,900	+				-0.5
2,674,901	-				-0.5
2,674,901	-				-1.9
2,674,908	+				+2.5
2,674,937	-				-0.1
2,674,940	+				+2.2
2,674,940	+				+1.0
2,674,961	-				+2.0
2,675,154	-				-0.2
2,675,216	-		LU632_RS13960	0.17	+1.2
2,675,245	-		LU632_RS13960	0.23	+0.7
2,675,251	+		LU632_RS13960	0.24	+1.9
2,675,252	-		LU632_RS13960	0.24	+1.9
2,675,475	+		LU632_RS13960	0.68	-1.2
2,675,507	+		LU632_RS13960	0.75	-2.2
2,675,508	-		LU632_RS13960	0.75	+0.6
2,675,633	-				+0.6
2,675,633	-				+3.6
2,675,633	-				+1.8
2,675,679	+				-4.3
2,675,696	+				-1.0
2,675,697	-				+1.3
2,675,711	+				+0.1
2,675,711	+				+0.4
2,675,712	-				+0.7
2,675,712	-				+1.5
2,675,712	-				-0.3
2,675,718	-				-1.6
2,675,772	+				-1.9
2,675,772	+				+0.8
2,675,773	-				+1.2