Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13840

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
2,655,534	-		LU632_RS13835	0.46	-0.2
2,655,534	-		LU632_RS13835	0.46	-0.5
2,655,662	-		LU632_RS13835	0.56	+1.7
2,655,662	-		LU632_RS13835	0.56	-0.7
2,655,962	-		LU632_RS13835	0.79	+0.2
2,655,967	-		LU632_RS13835	0.80	-2.6
2,655,967	-		LU632_RS13835	0.80	-1.0
2,656,015	-		LU632_RS13835	0.83	-0.6
2,656,230	+				-0.6
2,656,259	+				+2.5
2,656,388	+				-1.6
2,656,433	+				-0.2
2,656,433	+				-0.0
2,656,471	+				+0.7
2,656,471	+				-0.6
2,656,508	-				-0.9
2,656,518	+				+1.1
2,656,702	+	fliD	LU632_RS13840	0.14	-1.6
2,656,786	+	fliD	LU632_RS13840	0.20	-0.6
2,656,790	+	fliD	LU632_RS13840	0.20	-1.1
2,656,791	-	fliD	LU632_RS13840	0.20	-1.6
2,656,888	+	fliD	LU632_RS13840	0.27	+0.0
2,656,889	-	fliD	LU632_RS13840	0.27	-3.2
2,657,005	+	fliD	LU632_RS13840	0.35	+0.5
2,657,006	-	fliD	LU632_RS13840	0.35	-1.2
2,657,006	-	fliD	LU632_RS13840	0.35	-1.3
2,657,031	-	fliD	LU632_RS13840	0.37	+1.2
2,657,218	+	fliD	LU632_RS13840	0.50	+0.1
2,657,330	-	fliD	LU632_RS13840	0.58	+0.4
2,657,345	+	fliD	LU632_RS13840	0.59	-0.8
2,657,345	+	fliD	LU632_RS13840	0.59	+0.0
2,657,346	-	fliD	LU632_RS13840	0.59	-1.6
2,657,347	+	fliD	LU632_RS13840	0.59	-1.3
2,657,384	+	fliD	LU632_RS13840	0.62	+0.4
2,657,384	+	fliD	LU632_RS13840	0.62	-0.5
2,657,394	+	fliD	LU632_RS13840	0.63	+3.9
2,657,394	+	fliD	LU632_RS13840	0.63	-0.2
2,657,394	+	fliD	LU632_RS13840	0.63	+0.4
2,657,405	-	fliD	LU632_RS13840	0.63	+0.5
2,657,461	+	fliD	LU632_RS13840	0.67	+1.2
2,657,515	+	fliD	LU632_RS13840	0.71	-0.6
2,657,668	+	fliD	LU632_RS13840	0.82	+0.1
2,657,677	+	fliD	LU632_RS13840	0.83	-2.9
2,657,807	+				+1.0
2,657,863	+				+0.2
2,657,863	+				+0.3
2,657,937	+				-0.1
2,657,937	+				+1.1
2,658,198	+	fliS	LU632_RS13845	0.65	-1.2
2,658,339	+				-1.6
2,658,362	-				+2.9
2,658,533	-	fliT	LU632_RS13850	0.52	+1.9
2,658,648	-	fliT	LU632_RS13850	0.83	-0.9
2,658,657	+	fliT	LU632_RS13850	0.85	-1.4
2,658,658	-	fliT	LU632_RS13850	0.86	-3.8
2,658,659	+	fliT	LU632_RS13850	0.86	+0.8
2,658,763	+				+0.4
2,658,880	+				-0.2
2,658,880	+				+3.2