Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12795

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
2,434,939	+		LU632_RS12790	0.44	-0.5
2,434,942	+		LU632_RS12790	0.45	-3.5
2,434,943	-		LU632_RS12790	0.45	+1.7
2,434,943	-		LU632_RS12790	0.45	+0.3
2,434,959	+		LU632_RS12790	0.46	+1.5
2,434,959	+		LU632_RS12790	0.46	+1.3
2,434,959	+		LU632_RS12790	0.46	-1.2
2,435,018	-		LU632_RS12790	0.51	+2.7
2,435,105	-		LU632_RS12790	0.58	+1.5
2,435,190	+		LU632_RS12790	0.65	+0.5
2,435,191	-		LU632_RS12790	0.65	+0.3
2,435,218	-		LU632_RS12790	0.67	+0.3
2,435,369	+		LU632_RS12790	0.79	+0.3
2,435,369	+		LU632_RS12790	0.79	-0.7
2,435,445	-		LU632_RS12790	0.86	-0.3
2,435,453	-		LU632_RS12790	0.86	-0.2
2,435,575	+				+1.1
2,435,596	+				+0.9
2,435,855	-				+0.9
2,435,912	+		LU632_RS12795	0.16	-1.5
2,435,989	+		LU632_RS12795	0.34	-1.7
2,436,174	+		LU632_RS12795	0.78	-1.4
2,436,209	+		LU632_RS12795	0.86	-2.0
2,436,209	+		LU632_RS12795	0.86	+2.6
2,436,210	-		LU632_RS12795	0.87	+0.3
2,436,213	+		LU632_RS12795	0.87	+0.9
2,436,213	+		LU632_RS12795	0.87	-1.6
2,436,214	-		LU632_RS12795	0.88	-1.5
2,436,246	+				+0.1
2,436,246	+				+0.8
2,436,247	-				+0.6
2,436,247	-				+0.7
2,436,247	-				-0.5
2,436,266	+				+0.9
2,436,267	-				-1.3
2,436,286	+				-0.2
2,436,286	+				-1.4
2,436,286	+				-0.0
2,436,287	-				+2.0
2,436,287	-				-0.7
2,436,287	-				-3.2
2,436,287	-				+1.0
2,436,311	+				-1.2
2,436,312	-				-2.5
2,436,352	-				-0.5
2,436,450	+		LU632_RS12800	0.22	+0.0
2,436,561	+		LU632_RS12800	0.37	-1.1
2,436,580	-		LU632_RS12800	0.40	-0.5
2,436,715	-		LU632_RS12800	0.58	+0.3
2,436,807	+		LU632_RS12800	0.70	-4.4
2,436,808	-		LU632_RS12800	0.71	-1.6
2,436,819	+		LU632_RS12800	0.72	-0.1
2,436,819	+		LU632_RS12800	0.72	-0.1
2,436,987	-				-0.7
2,436,992	-				-2.7
2,437,006	+				-0.7
2,437,007	-				-0.4
2,437,007	-				-1.1