Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12440

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
2,360,549	+		LU632_RS12435	0.11	-2.0
2,360,627	+		LU632_RS12435	0.20	+1.1
2,360,655	+		LU632_RS12435	0.24	+1.6
2,360,872	-		LU632_RS12435	0.49	-1.3
2,360,872	-		LU632_RS12435	0.49	-0.7
2,360,872	-		LU632_RS12435	0.49	+0.3
2,360,872	-		LU632_RS12435	0.49	-0.5
2,360,874	-		LU632_RS12435	0.50	-0.0
2,361,154	-		LU632_RS12435	0.83	+1.0
2,361,154	-		LU632_RS12435	0.83	-2.3
2,361,214	-				-2.1
2,361,239	-				+0.3
2,361,546	+				+1.1
2,361,546	+				+0.1
2,361,794	-		LU632_RS12440	0.37	-0.8
2,361,857	-		LU632_RS12440	0.46	-2.3