Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12315

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
2,338,721	+		LU632_RS12305	0.53	+0.2
2,338,765	+		LU632_RS12305	0.57	+1.8
2,338,765	+		LU632_RS12305	0.57	+1.6
2,338,765	+		LU632_RS12305	0.57	+2.6
2,338,766	-		LU632_RS12305	0.57	+3.1
2,338,766	-		LU632_RS12305	0.57	-1.7
2,338,767	+		LU632_RS12305	0.57	-2.0
2,338,767	+		LU632_RS12305	0.57	+2.3
2,338,768	-		LU632_RS12305	0.57	+5.1
2,338,768	-		LU632_RS12305	0.57	+2.9
2,338,768	-		LU632_RS12305	0.57	+0.6
2,338,768	-		LU632_RS12305	0.57	+0.8
2,338,905	+		LU632_RS12305	0.68	+2.1
2,338,906	-		LU632_RS12305	0.68	+3.0
2,339,004	+		LU632_RS12305	0.77	-1.7
2,339,207	+				+0.3
2,339,303	+				+2.3
2,339,369	+				+0.3
2,339,370	-				-0.4
2,339,400	-				+0.3
2,339,400	-				+1.3
2,339,400	-				-0.8
2,339,401	+				-4.3
2,339,401	+				-1.7
2,339,402	-				+1.3
2,339,452	-		LU632_RS12310	0.20	+0.5
2,339,546	+		LU632_RS12310	0.76	+1.0
2,339,708	+				-2.0
2,339,764	+				-1.2
2,339,805	+		LU632_RS12315	0.13	-0.8
2,339,949	-		LU632_RS12315	0.26	+0.1
2,340,098	+		LU632_RS12315	0.40	-1.2
2,340,098	+		LU632_RS12315	0.40	-3.2
2,340,098	+		LU632_RS12315	0.40	+2.3
2,340,102	+		LU632_RS12315	0.40	+0.3
2,340,103	-		LU632_RS12315	0.40	-1.9
2,340,103	-		LU632_RS12315	0.40	-0.7
2,340,103	-		LU632_RS12315	0.40	-0.5
2,340,103	-		LU632_RS12315	0.40	-3.1
2,340,103	-		LU632_RS12315	0.40	-1.2
2,340,103	-		LU632_RS12315	0.40	+1.2
2,340,167	-		LU632_RS12315	0.46	-2.8
2,340,167	-		LU632_RS12315	0.46	-1.0
2,340,232	+		LU632_RS12315	0.52	-1.2
2,340,320	-		LU632_RS12315	0.59	+0.7
2,340,320	-		LU632_RS12315	0.59	+0.9
2,340,320	-		LU632_RS12315	0.59	+0.4
2,340,320	-		LU632_RS12315	0.59	+0.9
2,340,381	+		LU632_RS12315	0.65	-0.9
2,340,396	-		LU632_RS12315	0.66	-3.1
2,340,411	-		LU632_RS12315	0.68	+0.9
2,340,499	-		LU632_RS12315	0.76	-3.5
2,340,499	-		LU632_RS12315	0.76	-0.9
2,340,514	+		LU632_RS12315	0.77	-0.8
2,340,642	+		LU632_RS12315	0.88	+0.2
2,340,646	-		LU632_RS12315	0.89	+0.5
2,340,646	-		LU632_RS12315	0.89	-0.7
2,340,693	+				+0.7
2,340,693	+				-2.2
2,340,693	+				-1.2
2,340,694	-				-2.0
2,340,694	-				+1.5
2,340,694	-				+1.7
2,340,694	-				+0.2
2,340,726	-				-1.0
2,340,740	+				-0.8
2,340,853	+				-1.5
2,340,854	-				-0.8
2,341,005	+	msrA	LU632_RS12320	0.29	+1.9
2,341,005	+	msrA	LU632_RS12320	0.29	+1.3
2,341,006	-	msrA	LU632_RS12320	0.29	-2.0
2,341,130	+	msrA	LU632_RS12320	0.52	+1.9
2,341,131	-	msrA	LU632_RS12320	0.53	-0.7
2,341,171	-	msrA	LU632_RS12320	0.60	-0.2
2,341,246	-	msrA	LU632_RS12320	0.74	-2.5
2,341,256	-	msrA	LU632_RS12320	0.76	+0.7
2,341,256	-	msrA	LU632_RS12320	0.76	-1.8
2,341,286	-	msrA	LU632_RS12320	0.82	+0.7
2,341,382	+				+0.7
2,341,383	-				+1.5
2,341,465	-				+1.2
2,341,621	+				-0.4
2,341,639	-				-2.5
2,341,640	+				-1.2
2,341,640	+				-0.1
2,341,640	+				+0.8
2,341,640	+				+0.7
2,341,641	-				+2.2
2,341,641	-				-0.7
2,341,641	-				+0.1
2,341,641	-				-1.7
2,341,641	-				+2.3
2,341,641	-				+0.9
2,341,673	+				+1.1
2,341,673	+				-0.1
2,341,758	+				+2.1
2,341,759	-				-0.8