Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12245

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
2,324,581	-				+0.3
2,325,506	+				-1.0
2,325,516	+				-2.5
2,325,516	-				-0.4
2,325,551	+				+1.1
2,325,614	-				+0.5
2,325,614	-				+1.1
2,325,616	-				-0.6
2,325,643	+				-0.2
2,325,644	-				+0.1
2,325,644	-				-0.1
2,325,801	+				-1.3
2,325,974	+		LU632_RS12250	0.12	+0.9
2,325,974	+		LU632_RS12250	0.12	+0.5
2,325,974	+		LU632_RS12250	0.12	+4.1
2,325,974	+		LU632_RS12250	0.12	-2.0
2,325,974	+		LU632_RS12250	0.12	-1.7
2,325,976	+		LU632_RS12250	0.12	-2.8
2,326,062	+		LU632_RS12250	0.16	-2.7
2,326,062	+		LU632_RS12250	0.16	+1.0
2,326,138	+		LU632_RS12250	0.19	+0.9
2,326,139	-		LU632_RS12250	0.19	-0.0
2,326,178	-		LU632_RS12250	0.21	-1.0
2,326,184	+		LU632_RS12250	0.21	-0.5
2,326,185	-		LU632_RS12250	0.21	-1.6
2,326,210	-		LU632_RS12250	0.23	+0.7
2,326,230	+		LU632_RS12250	0.23	+1.3
2,326,230	+		LU632_RS12250	0.23	-0.7