Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12205

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
2,314,945	+		LU632_RS12195	0.86	-1.4
2,314,946	-		LU632_RS12195	0.86	+1.0
2,315,125	+				+0.3
2,315,125	+				-0.8
2,315,126	-				+0.3
2,315,147	+				-0.5
2,315,147	+				-0.1
2,315,148	-				+0.3
2,315,259	-				+1.0
2,315,259	-				-2.3
2,315,259	-				-3.9
2,315,259	-				+0.1
2,315,261	-				+1.1
2,315,317	+				+2.1
2,315,318	-				-0.1
2,315,417	-				+1.0
2,315,475	-				+1.6
2,315,480	+				+1.1
2,315,503	+				+0.9
2,315,504	-				-1.7
2,315,504	-				+1.2
2,315,504	-				-0.5
2,315,557	-				+0.2
2,315,632	+				-1.3
2,315,632	+				-2.3
2,315,635	+				-1.1
2,315,635	+				-0.2
2,315,643	+				+0.7
2,315,643	+				+0.3
2,315,644	-				+0.0
2,315,658	+				+0.5
2,315,704	-		LU632_RS12200	0.22	+0.7
2,315,805	-		LU632_RS12200	0.63	-2.7
2,315,922	-				-0.7
2,315,933	+				+1.3
2,315,933	+				-0.5
2,315,933	+				+2.2
2,315,934	-				-1.5
2,315,972	-				-0.5
2,315,989	-				-2.7
2,316,016	+				+1.5
2,316,016	+				-0.8
2,316,017	-				+0.9
2,316,071	+		LU632_RS12205	0.11	-1.7
2,316,156	-		LU632_RS12205	0.18	-0.4
2,316,156	-		LU632_RS12205	0.18	+0.0
2,316,162	-		LU632_RS12205	0.18	-0.5
2,316,166	+		LU632_RS12205	0.19	+0.5
2,316,167	-		LU632_RS12205	0.19	-0.1
2,316,232	-		LU632_RS12205	0.24	+1.7
2,316,232	-		LU632_RS12205	0.24	-0.8
2,316,319	+		LU632_RS12205	0.30	+0.0
2,316,352	-		LU632_RS12205	0.33	-3.7
2,316,352	-		LU632_RS12205	0.33	+1.2
2,316,376	+		LU632_RS12205	0.35	-0.9
2,316,377	-		LU632_RS12205	0.35	-1.8
2,316,473	-		LU632_RS12205	0.42	-1.2
2,316,473	-		LU632_RS12205	0.42	-0.3
2,316,556	+		LU632_RS12205	0.49	-0.8
2,316,557	-		LU632_RS12205	0.49	+0.6
2,316,567	+		LU632_RS12205	0.50	-0.7
2,316,601	+		LU632_RS12205	0.52	+0.5
2,316,601	+		LU632_RS12205	0.52	-2.7
2,316,602	-		LU632_RS12205	0.52	-0.2
2,316,605	-		LU632_RS12205	0.53	+0.3
2,316,675	+		LU632_RS12205	0.58	+1.2
2,316,676	-		LU632_RS12205	0.58	-0.6
2,316,678	+		LU632_RS12205	0.58	-2.3
2,316,679	-		LU632_RS12205	0.58	-2.0
2,316,812	+		LU632_RS12205	0.69	+0.3
2,316,942	+		LU632_RS12205	0.79	-3.6
2,316,942	+		LU632_RS12205	0.79	-2.4
2,316,942	+		LU632_RS12205	0.79	-1.7
2,317,001	-		LU632_RS12205	0.84	+0.3
2,317,018	+		LU632_RS12205	0.85	+0.2
2,317,018	+		LU632_RS12205	0.85	+3.5
2,317,019	-		LU632_RS12205	0.85	+0.2
2,317,019	-		LU632_RS12205	0.85	+1.9
2,317,107	-				+0.3
2,317,108	+				+1.2
2,317,108	+				-2.0
2,317,108	+				+0.4
2,317,167	-				-0.6
2,317,214	+				-1.9
2,317,290	+				+0.9
2,317,291	-				+2.9
2,317,360	-				-1.7
2,317,370	+				+4.0
2,317,370	+				+0.3
2,317,371	-				+0.0
2,317,371	-				-2.8
2,317,375	+				-3.3
2,317,482	+				+0.0
2,317,585	+				+1.7
2,317,714	-	zntB	LU632_RS12210	0.18	+1.8
2,317,715	+	zntB	LU632_RS12210	0.18	-0.2
2,317,715	+	zntB	LU632_RS12210	0.18	-1.7
2,317,715	+	zntB	LU632_RS12210	0.18	-0.2
2,317,716	-	zntB	LU632_RS12210	0.18	+0.3
2,317,716	-	zntB	LU632_RS12210	0.18	-0.7
2,317,716	-	zntB	LU632_RS12210	0.18	+2.6
2,317,754	-	zntB	LU632_RS12210	0.22	-0.6
2,317,830	+	zntB	LU632_RS12210	0.30	-2.5
2,317,918	-	zntB	LU632_RS12210	0.39	+2.9
2,317,918	-	zntB	LU632_RS12210	0.39	+0.6
2,317,951	+	zntB	LU632_RS12210	0.42	+0.3
2,318,011	-	zntB	LU632_RS12210	0.48	-0.7
2,318,013	+	zntB	LU632_RS12210	0.49	+1.3
2,318,014	-	zntB	LU632_RS12210	0.49	-2.7
2,318,016	+	zntB	LU632_RS12210	0.49	+0.9
2,318,024	-	zntB	LU632_RS12210	0.50	-1.4
2,318,163	+	zntB	LU632_RS12210	0.64	+0.5
2,318,187	+	zntB	LU632_RS12210	0.66	-2.7
2,318,192	-	zntB	LU632_RS12210	0.67	+0.5
2,318,197	+	zntB	LU632_RS12210	0.67	+0.1