Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11675

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
2,218,948	+				-0.8
2,219,024	+				+0.2
2,219,050	+				+1.3
2,219,060	+				-0.7
2,219,060	+				-1.8
2,219,061	-				-1.0
2,219,061	-				+0.5
2,219,061	-				-1.3
2,219,061	-				-1.1
2,219,088	-		LU632_RS11660	0.19	+0.6
2,219,120	-		LU632_RS11660	0.42	+0.4
2,219,135	-		LU632_RS11660	0.52	-1.3
2,219,187	+		LU632_RS11660	0.89	+0.9
2,219,188	-				-0.2
2,219,191	+				-1.7
2,219,191	+				-0.7
2,219,191	+				-0.1
2,219,192	-				+1.5
2,219,207	+				-1.7
2,219,208	-				-1.2
2,219,208	-				-0.4
2,219,414	-				+2.0
2,219,414	-				-0.9
2,219,458	+				+2.0
2,219,539	+	rhaM	LU632_RS11670	0.14	-2.3
2,219,561	-	rhaM	LU632_RS11670	0.21	+0.4
2,219,561	-	rhaM	LU632_RS11670	0.21	+0.6
2,219,688	+	rhaM	LU632_RS11670	0.61	-0.3
2,219,757	+	rhaM	LU632_RS11670	0.83	-1.7
2,219,809	+				-1.7
2,219,809	+				+1.7
2,219,810	-				-0.1
2,219,810	-				-3.7
2,219,812	-				+0.6
2,219,891	+	rhaD	LU632_RS11675	0.11	-0.2
2,219,960	+	rhaD	LU632_RS11675	0.19	-1.5
2,220,188	-	rhaD	LU632_RS11675	0.46	-1.9
2,220,328	+	rhaD	LU632_RS11675	0.63	-1.9
2,220,328	+	rhaD	LU632_RS11675	0.63	-1.3
2,220,328	+	rhaD	LU632_RS11675	0.63	-2.7
2,220,331	-	rhaD	LU632_RS11675	0.63	-0.7
2,220,401	+	rhaD	LU632_RS11675	0.71	-0.8
2,220,584	+				-1.6
2,220,584	+				+0.3
2,220,584	+				+1.6
2,220,584	+				-2.0
2,220,584	+				-0.1
2,220,584	+				+0.4
2,220,585	-				-0.0
2,220,585	-				-1.0
2,220,679	+				+1.1
2,220,680	-				-2.6
2,220,688	-				+0.4
2,220,737	-				+0.3
2,220,803	-		LU632_RS11680	0.12	-1.9
2,220,849	+		LU632_RS11680	0.16	-3.0
2,220,850	-		LU632_RS11680	0.16	+0.1
2,220,850	-		LU632_RS11680	0.16	-2.0
2,220,906	-		LU632_RS11680	0.20	-1.3
2,221,056	+		LU632_RS11680	0.32	+0.2
2,221,072	+		LU632_RS11680	0.33	-3.3
2,221,072	+		LU632_RS11680	0.33	-0.1
2,221,072	+		LU632_RS11680	0.33	+1.3
2,221,072	+		LU632_RS11680	0.33	-0.6
2,221,072	+		LU632_RS11680	0.33	+0.3
2,221,199	-		LU632_RS11680	0.44	-1.4
2,221,214	+		LU632_RS11680	0.45	-0.7
2,221,244	+		LU632_RS11680	0.47	-1.9
2,221,275	+		LU632_RS11680	0.50	-4.1
2,221,296	-		LU632_RS11680	0.51	+0.9
2,221,296	-		LU632_RS11680	0.51	+0.6
2,221,330	-		LU632_RS11680	0.54	-1.5