Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11165

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
2,134,613	+	pykF	LU632_RS11145	0.66	+2.3
2,134,763	-	pykF	LU632_RS11145	0.77	+1.3
2,134,814	-	pykF	LU632_RS11145	0.81	+0.3
2,134,814	-	pykF	LU632_RS11145	0.81	-0.7
2,134,942	+	pykF	LU632_RS11145	0.90	+1.3
2,135,006	-				+1.6
2,135,095	-				-1.5
2,135,101	+				-0.3
2,135,240	-		LU632_RS11150	0.76	-1.2
2,135,324	+				+1.9
2,135,374	+				+1.3
2,135,452	+		LU632_RS11155	0.13	+0.4
2,135,510	+		LU632_RS11155	0.88	+0.4
2,135,882	-				+0.6
2,135,890	+				-0.7
2,135,933	-				-2.2
2,135,997	+		LU632_RS11170	0.12	+0.7
2,136,025	+		LU632_RS11170	0.14	+0.6
2,136,037	+		LU632_RS11170	0.15	+0.3
2,136,050	-		LU632_RS11170	0.16	-1.3
2,136,178	-		LU632_RS11170	0.25	-0.8
2,136,381	-		LU632_RS11170	0.40	-0.8
2,136,506	+		LU632_RS11170	0.49	-0.7
2,136,507	-		LU632_RS11170	0.49	+2.5
2,136,507	-		LU632_RS11170	0.49	-2.2
2,136,507	-		LU632_RS11170	0.49	+1.6
2,136,507	-		LU632_RS11170	0.49	+0.5
2,136,526	+		LU632_RS11170	0.50	-0.1
2,136,526	+		LU632_RS11170	0.50	+1.9