Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10510

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
2,008,869	+				+0.6
2,008,870	-				+4.0
2,008,873	+				-0.6
2,008,873	+				+0.4
2,008,874	-				-1.2
2,008,874	-				-1.6
2,008,874	-				+0.1
2,008,874	-				+0.7
2,008,909	-		LU632_RS10500	0.15	+0.4
2,008,914	+		LU632_RS10500	0.19	+1.0
2,008,915	-		LU632_RS10500	0.19	+3.8
2,008,915	-		LU632_RS10500	0.19	-0.2
2,008,932	+		LU632_RS10500	0.30	+1.4
2,008,933	-		LU632_RS10500	0.31	-2.4
2,008,933	-		LU632_RS10500	0.31	-1.0
2,009,066	+				-1.5
2,009,067	-				+2.0
2,009,074	+				-0.4
2,009,075	-				-1.8
2,009,078	+				+0.3
2,009,078	+				+0.6
2,009,133	+		LU632_RS10505	0.12	+0.4
2,009,215	+		LU632_RS10505	0.25	+0.4
2,009,237	-		LU632_RS10505	0.29	-0.0
2,009,237	-		LU632_RS10505	0.29	+0.3
2,009,237	-		LU632_RS10505	0.29	-3.3
2,009,238	+		LU632_RS10505	0.29	+0.6
2,009,238	+		LU632_RS10505	0.29	-1.1
2,009,239	-		LU632_RS10505	0.29	-2.2
2,009,239	-		LU632_RS10505	0.29	-1.4
2,009,239	-		LU632_RS10505	0.29	+2.6
2,009,239	-		LU632_RS10505	0.29	+1.0
2,009,310	+		LU632_RS10505	0.41	-1.0
2,009,310	+		LU632_RS10505	0.41	+0.9
2,009,311	-		LU632_RS10505	0.42	+0.3
2,009,318	-		LU632_RS10505	0.43	-2.8
2,009,378	-		LU632_RS10505	0.53	+0.9
2,009,416	+		LU632_RS10505	0.59	+0.9
2,009,416	+		LU632_RS10505	0.59	+1.4
2,009,438	+		LU632_RS10505	0.63	-1.2
2,009,438	+		LU632_RS10505	0.63	-1.4
2,009,438	+		LU632_RS10505	0.63	+0.9
2,009,439	-		LU632_RS10505	0.63	+1.2
2,009,499	-		LU632_RS10505	0.73	+1.0
2,009,539	+		LU632_RS10505	0.80	+0.1
2,009,542	+		LU632_RS10505	0.80	+0.6
2,009,594	+		LU632_RS10505	0.89	-0.8
2,009,594	+		LU632_RS10505	0.89	+0.4
2,009,676	+				+1.6
2,009,740	-				+0.2
2,009,771	+				+0.1
2,009,771	+				+1.3
2,009,800	+				-0.4
2,009,853	-				+0.5
2,009,868	-				+2.1
2,009,910	-				+1.9
2,010,200	+	rcsA	LU632_RS10510	0.55	+2.2
2,010,544	-				+3.3
2,010,906	+				+0.7
2,010,913	+				+0.4
2,010,994	-				+0.5
2,011,129	+				+0.7
2,011,177	+				+0.6
2,011,234	-	fliR	LU632_RS10515	0.13	-2.8
2,011,237	+	fliR	LU632_RS10515	0.13	+0.6
2,011,412	+	fliR	LU632_RS10515	0.36	+0.1
2,011,453	-	fliR	LU632_RS10515	0.41	-0.6
2,011,479	+	fliR	LU632_RS10515	0.44	-1.2
2,011,480	-	fliR	LU632_RS10515	0.44	-0.5