Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS10070 and LU632_RS10075 are separated by 196 nucleotides LU632_RS10075 and LU632_RS10080 are separated by 63 nucleotides LU632_RS10080 and hspQ are separated by 12 nucleotides hspQ and rlmI are separated by 58 nucleotides
LU632_RS10070: LU632_RS10070 - DUF2057 family protein, at 1,928,170 to 1,928,358
_RS10070
LU632_RS10075: LU632_RS10075 - IS1 family transposase, at 1,928,555 to 1,929,252
_RS10075
LU632_RS10080: LU632_RS10080 - CoA-binding protein, at 1,929,316 to 1,929,729
_RS10080
LU632_RS10085: hspQ - heat shock protein HspQ, at 1,929,742 to 1,930,058
hspQ
LU632_RS10090: rlmI - 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI, at 1,930,117 to 1,931,307
rlmI
Position (kb) 1929
1930 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1928.329 kb on - strand, within LU632_RS10070 at 1928.555 kb on - strand at 1928.555 kb on - strand at 1929.284 kb on - strand at 1929.313 kb on + strand at 1929.313 kb on + strand at 1929.313 kb on + strand at 1929.313 kb on + strand at 1929.339 kb on + strand at 1929.403 kb on + strand, within LU632_RS10080 at 1929.403 kb on + strand, within LU632_RS10080 at 1929.404 kb on - strand, within LU632_RS10080 at 1929.406 kb on - strand, within LU632_RS10080 at 1929.406 kb on - strand, within LU632_RS10080 at 1929.418 kb on + strand, within LU632_RS10080 at 1929.436 kb on + strand, within LU632_RS10080 at 1929.439 kb on - strand, within LU632_RS10080 at 1929.444 kb on - strand, within LU632_RS10080 at 1929.631 kb on - strand, within LU632_RS10080 at 1929.675 kb on + strand, within LU632_RS10080 at 1929.675 kb on + strand, within LU632_RS10080 at 1929.743 kb on + strand at 1929.766 kb on - strand at 1929.785 kb on + strand, within hspQ at 1929.785 kb on + strand, within hspQ at 1929.785 kb on + strand, within hspQ at 1929.859 kb on + strand, within hspQ at 1929.859 kb on + strand, within hspQ at 1929.864 kb on - strand, within hspQ at 1929.864 kb on - strand, within hspQ at 1929.864 kb on - strand, within hspQ at 1929.982 kb on - strand, within hspQ at 1930.016 kb on + strand, within hspQ at 1930.016 kb on + strand, within hspQ at 1930.078 kb on - strand at 1930.078 kb on - strand at 1930.148 kb on + strand at 1930.148 kb on + strand at 1930.150 kb on + strand at 1930.150 kb on + strand at 1930.151 kb on - strand at 1930.151 kb on - strand at 1930.151 kb on - strand at 1930.341 kb on + strand, within rlmI at 1930.342 kb on - strand, within rlmI at 1930.345 kb on + strand, within rlmI at 1930.345 kb on + strand, within rlmI at 1930.345 kb on + strand, within rlmI at 1930.345 kb on + strand, within rlmI at 1930.346 kb on - strand, within rlmI at 1930.346 kb on - strand, within rlmI at 1930.346 kb on - strand, within rlmI at 1930.346 kb on - strand, within rlmI at 1930.346 kb on - strand, within rlmI at 1930.346 kb on - strand, within rlmI at 1930.413 kb on + strand, within rlmI at 1930.414 kb on - strand, within rlmI at 1930.535 kb on - strand, within rlmI at 1930.557 kb on + strand, within rlmI at 1930.558 kb on - strand, within rlmI at 1930.568 kb on - strand, within rlmI at 1930.632 kb on + strand, within rlmI at 1930.639 kb on - strand, within rlmI at 1930.655 kb on + strand, within rlmI at 1930.656 kb on - strand, within rlmI at 1930.694 kb on + strand, within rlmI at 1930.694 kb on + strand, within rlmI
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 1,928,329 - LU632_RS10070 0.84 +0.1 1,928,555 - +0.1 1,928,555 - -1.2 1,929,284 - -1.2 1,929,313 + -1.7 1,929,313 + -3.2 1,929,313 + +0.3 1,929,313 + +0.6 1,929,339 + -0.4 1,929,403 + LU632_RS10080 0.21 -2.0 1,929,403 + LU632_RS10080 0.21 +1.0 1,929,404 - LU632_RS10080 0.21 -1.0 1,929,406 - LU632_RS10080 0.22 -2.0 1,929,406 - LU632_RS10080 0.22 -1.0 1,929,418 + LU632_RS10080 0.25 +1.1 1,929,436 + LU632_RS10080 0.29 +1.4 1,929,439 - LU632_RS10080 0.30 -1.0 1,929,444 - LU632_RS10080 0.31 -0.8 1,929,631 - LU632_RS10080 0.76 -0.4 1,929,675 + LU632_RS10080 0.87 -1.9 1,929,675 + LU632_RS10080 0.87 -0.2 1,929,743 + +1.0 1,929,766 - +1.8 1,929,785 + hspQ LU632_RS10085 0.14 +0.4 1,929,785 + hspQ LU632_RS10085 0.14 +3.0 1,929,785 + hspQ LU632_RS10085 0.14 -0.6 1,929,859 + hspQ LU632_RS10085 0.37 -2.2 1,929,859 + hspQ LU632_RS10085 0.37 -2.8 1,929,864 - hspQ LU632_RS10085 0.38 -0.2 1,929,864 - hspQ LU632_RS10085 0.38 -2.2 1,929,864 - hspQ LU632_RS10085 0.38 -0.1 1,929,982 - hspQ LU632_RS10085 0.76 -1.0 1,930,016 + hspQ LU632_RS10085 0.86 -1.1 1,930,016 + hspQ LU632_RS10085 0.86 -2.2 1,930,078 - -1.2 1,930,078 - +0.4 1,930,148 + +0.8 1,930,148 + -0.6 1,930,150 + -2.6 1,930,150 + +1.0 1,930,151 - +1.2 1,930,151 - -1.4 1,930,151 - -0.7 1,930,341 + rlmI LU632_RS10090 0.19 -0.6 1,930,342 - rlmI LU632_RS10090 0.19 -0.4 1,930,345 + rlmI LU632_RS10090 0.19 +1.2 1,930,345 + rlmI LU632_RS10090 0.19 +0.6 1,930,345 + rlmI LU632_RS10090 0.19 +0.3 1,930,345 + rlmI LU632_RS10090 0.19 +0.0 1,930,346 - rlmI LU632_RS10090 0.19 -2.6 1,930,346 - rlmI LU632_RS10090 0.19 +1.2 1,930,346 - rlmI LU632_RS10090 0.19 +1.4 1,930,346 - rlmI LU632_RS10090 0.19 -2.2 1,930,346 - rlmI LU632_RS10090 0.19 -2.0 1,930,346 - rlmI LU632_RS10090 0.19 -1.9 1,930,413 + rlmI LU632_RS10090 0.25 -1.2 1,930,414 - rlmI LU632_RS10090 0.25 +2.7 1,930,535 - rlmI LU632_RS10090 0.35 -2.8 1,930,557 + rlmI LU632_RS10090 0.37 -0.5 1,930,558 - rlmI LU632_RS10090 0.37 -1.2 1,930,568 - rlmI LU632_RS10090 0.38 +1.5 1,930,632 + rlmI LU632_RS10090 0.43 -1.5 1,930,639 - rlmI LU632_RS10090 0.44 -2.0 1,930,655 + rlmI LU632_RS10090 0.45 -0.9 1,930,656 - rlmI LU632_RS10090 0.45 -0.7 1,930,694 + rlmI LU632_RS10090 0.48 -2.9 1,930,694 + rlmI LU632_RS10090 0.48 +1.3
Or see this region's nucleotide sequence