Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09695

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
1,836,657	+				-1.1
1,836,657	+				-1.0
1,836,658	-				-2.0
1,836,658	-				-3.9
1,836,755	+				+0.1
1,836,785	+				+1.8
1,836,804	-				+2.2
1,836,804	-				+2.9
1,836,834	-				+1.2
1,836,875	+				+0.9
1,836,876	-				+3.0
1,836,933	+				+0.6
1,836,933	+				+0.4
1,837,005	+				-0.6
1,837,026	+				-1.1
1,837,041	+				-0.8
1,837,123	-				-1.9
1,837,230	+				+3.1
1,837,243	-				+0.9
1,837,243	-				-1.8
1,837,245	-				-0.8
1,837,284	-				-3.1
1,837,336	-				+0.1
1,837,345	+				-2.1
1,837,349	+				+0.2
1,837,350	-				+0.3
1,837,358	-				-1.4
1,837,401	+				+0.8
1,837,414	-				+4.5
1,837,414	-				-2.1
1,837,458	-				+0.7
1,837,458	-				+0.8
1,837,481	-				-2.0
1,837,481	-				-0.6
1,837,498	-				-0.3
1,837,518	+				-0.3
1,837,731	+		LU632_RS09695	0.51	+1.2
1,837,821	-				+0.5
1,837,821	-				+0.1
1,837,826	+				-1.4
1,837,838	+				-0.6
1,837,938	+				+0.1
1,838,011	+				+1.5
1,838,051	+				+0.4
1,838,087	+				-0.2
1,838,087	+				-1.2
1,838,088	-				+4.1
1,838,160	+				-2.1
1,838,272	-	clpS	LU632_RS09700	0.35	-1.1
1,838,297	+	clpS	LU632_RS09700	0.42	-1.8
1,838,423	+	clpS	LU632_RS09700	0.82	+0.1
1,838,424	-	clpS	LU632_RS09700	0.82	+0.4
1,838,424	-	clpS	LU632_RS09700	0.82	+2.7
1,838,428	-	clpS	LU632_RS09700	0.83	-2.1
1,838,428	-	clpS	LU632_RS09700	0.83	-1.6
1,838,432	-	clpS	LU632_RS09700	0.84	+1.9
1,838,463	+				+0.2
1,838,464	-				-0.8
1,838,493	+				-2.1
1,838,494	-				-3.6
1,838,509	+				-0.8
1,838,509	+				-3.1
1,838,538	+				+2.8
1,838,599	-				-0.6
1,838,599	-				-2.1
1,838,618	-				-3.0