Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09685

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
1,834,312	-				-1.5
1,834,354	+				-1.8
1,834,354	+				-1.1
1,834,354	+				-2.1
1,834,355	-				-1.6
1,834,355	-				-1.2
1,834,417	-	artJ	LU632_RS09680	0.12	-1.5
1,834,598	-	artJ	LU632_RS09680	0.36	+1.1
1,834,607	-	artJ	LU632_RS09680	0.38	+1.9
1,834,754	-	artJ	LU632_RS09680	0.58	-0.8
1,834,877	+	artJ	LU632_RS09680	0.74	-2.5
1,834,972	+	artJ	LU632_RS09680	0.87	-2.7
1,835,066	+				-0.5
1,835,066	+				-0.5
1,835,091	+				+0.8
1,835,091	+				-1.9
1,835,092	-				-0.3
1,835,092	-				-3.3
1,835,123	-				-2.9
1,835,168	-	artP	LU632_RS09685	0.12	-0.3
1,835,169	+	artP	LU632_RS09685	0.12	-2.1
1,835,169	+	artP	LU632_RS09685	0.12	-1.9
1,835,170	-	artP	LU632_RS09685	0.13	-1.9
1,835,170	-	artP	LU632_RS09685	0.13	+3.1
1,835,170	-	artP	LU632_RS09685	0.13	+1.7
1,835,174	+	artP	LU632_RS09685	0.13	+1.4
1,835,468	+	artP	LU632_RS09685	0.53	-2.1
1,835,469	-	artP	LU632_RS09685	0.54	-0.3
1,835,536	-	artP	LU632_RS09685	0.63	-1.5
1,835,783	-				+0.5
1,835,879	+				+5.6
1,835,987	+				+1.5
1,835,987	+				+2.7
1,835,988	-				+0.9
1,836,073	-		LU632_RS09690	0.12	+0.4
1,836,103	+		LU632_RS09690	0.18	-1.9
1,836,138	+		LU632_RS09690	0.24	+2.1
1,836,138	+		LU632_RS09690	0.24	-2.9
1,836,138	+		LU632_RS09690	0.24	-0.1
1,836,138	+		LU632_RS09690	0.24	+3.1
1,836,139	-		LU632_RS09690	0.24	-1.5
1,836,159	+		LU632_RS09690	0.28	+1.7
1,836,295	-		LU632_RS09690	0.53	-0.3
1,836,317	+		LU632_RS09690	0.57	+2.0
1,836,318	-		LU632_RS09690	0.58	+0.6
1,836,319	+		LU632_RS09690	0.58	+0.3
1,836,320	-		LU632_RS09690	0.58	+0.5
1,836,335	+		LU632_RS09690	0.61	+0.8
1,836,404	+		LU632_RS09690	0.74	-0.2
1,836,473	+		LU632_RS09690	0.86	-0.2
1,836,493	-				+0.3
1,836,508	+				+0.5
1,836,509	-				+2.7
1,836,532	+				-0.4
1,836,532	+				-0.5
1,836,532	+				-0.3
1,836,657	+				-1.1
1,836,657	+				-1.0
1,836,658	-				-1.9
1,836,658	-				-3.9
1,836,755	+				+0.1
1,836,785	+				+1.8
1,836,804	-				+2.2
1,836,804	-				+2.9