Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09475

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
1,793,709	+				+2.5
1,793,709	+				-0.5
1,793,736	+				+0.3
1,793,795	+				+0.0
1,793,956	+	ompX	LU632_RS09470	0.39	-2.5
1,793,956	+	ompX	LU632_RS09470	0.39	-0.9
1,793,956	+	ompX	LU632_RS09470	0.39	-1.1
1,793,991	+	ompX	LU632_RS09470	0.45	-0.5
1,793,992	-	ompX	LU632_RS09470	0.46	-0.5
1,794,004	+	ompX	LU632_RS09470	0.48	-1.1
1,794,005	-	ompX	LU632_RS09470	0.48	-2.6
1,794,058	+	ompX	LU632_RS09470	0.58	-1.5
1,794,058	+	ompX	LU632_RS09470	0.58	+0.3
1,794,059	-	ompX	LU632_RS09470	0.59	+0.5
1,794,065	+	ompX	LU632_RS09470	0.60	-2.1
1,794,065	+	ompX	LU632_RS09470	0.60	-0.7
1,794,085	-	ompX	LU632_RS09470	0.64	+0.5
1,794,166	-	ompX	LU632_RS09470	0.80	+0.5
1,794,254	+				-0.8
1,794,255	-				+0.5
1,794,269	-				-1.1
1,794,459	+				+1.1
1,794,472	-				+0.5
1,794,474	-				+2.1
1,794,486	-				-1.1
1,794,503	-				-1.8
1,794,651	+	mntR	LU632_RS09475	0.10	-3.9
1,794,652	-	mntR	LU632_RS09475	0.10	-5.1
1,794,652	-	mntR	LU632_RS09475	0.10	-1.2
1,794,652	-	mntR	LU632_RS09475	0.10	-1.8
1,794,727	+	mntR	LU632_RS09475	0.27	-2.9
1,795,056	-				-2.1
1,795,108	-				+0.6
1,795,108	-				+0.2
1,795,128	+				+2.7
1,795,128	+				+0.0
1,795,129	-				+1.3
1,795,129	-				-1.1
1,795,129	-				-3.9
1,795,132	-				+0.7
1,795,132	-				-0.4
1,795,137	+				+0.4
1,795,137	+				+1.0
1,795,138	-				-2.1
1,795,138	-				-2.9
1,795,146	+				-0.5
1,795,149	+				-0.3
1,795,150	-				-2.8
1,795,210	+		LU632_RS09480	0.11	-0.6
1,795,211	-		LU632_RS09480	0.12	-2.2
1,795,241	-		LU632_RS09480	0.14	+1.2
1,795,447	-		LU632_RS09480	0.33	-1.1
1,795,450	+		LU632_RS09480	0.33	-2.9
1,795,556	-		LU632_RS09480	0.42	-2.6
1,795,645	+		LU632_RS09480	0.50	-3.3
1,795,706	+		LU632_RS09480	0.56	-2.1
1,795,707	-		LU632_RS09480	0.56	+0.1
1,795,707	-		LU632_RS09480	0.56	-1.0
1,795,707	-		LU632_RS09480	0.56	-0.4
1,795,707	-		LU632_RS09480	0.56	-0.2
1,795,773	+		LU632_RS09480	0.62	+0.6
1,795,773	+		LU632_RS09480	0.62	+0.1
1,795,781	-		LU632_RS09480	0.63	-0.6
1,795,854	+		LU632_RS09480	0.69	+1.3
1,795,855	-		LU632_RS09480	0.69	-1.5
1,795,855	-		LU632_RS09480	0.69	-1.1
1,795,893	+		LU632_RS09480	0.73	+0.0
1,795,893	+		LU632_RS09480	0.73	-1.1
1,795,928	+		LU632_RS09480	0.76	+0.8
1,795,928	+		LU632_RS09480	0.76	+0.2
1,795,929	-		LU632_RS09480	0.76	-1.5
1,796,010	+		LU632_RS09480	0.83	-0.1
1,796,010	+		LU632_RS09480	0.83	+2.0