Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09335

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
1,765,950	+				-1.1
1,765,952	+				-2.8
1,765,952	+				+1.4
1,765,952	+				-1.0
1,766,046	+		LU632_RS09330	0.13	+0.5
1,766,111	+		LU632_RS09330	0.21	-0.2
1,766,111	+		LU632_RS09330	0.21	+0.9
1,766,283	-		LU632_RS09330	0.41	-0.7
1,766,384	+		LU632_RS09330	0.52	+1.0
1,766,385	-		LU632_RS09330	0.52	+1.6
1,766,385	-		LU632_RS09330	0.52	-0.1
1,766,429	-		LU632_RS09330	0.58	+2.0
1,766,431	+		LU632_RS09330	0.58	-1.5
1,766,432	-		LU632_RS09330	0.58	-3.1
1,766,565	+		LU632_RS09330	0.73	-0.7
1,766,565	+		LU632_RS09330	0.73	+4.5
1,766,566	-		LU632_RS09330	0.73	-1.5
1,766,677	-		LU632_RS09330	0.86	+0.3
1,766,876	-				-0.4
1,766,899	+				+0.7
1,766,900	-				+0.7
1,767,074	+				-2.3
1,767,084	-				+0.9
1,767,084	-				-2.5
1,767,093	-				+0.5
1,767,093	-				-0.3
1,767,105	-				-0.3
1,767,345	+		LU632_RS09335	0.22	-0.8
1,767,346	-		LU632_RS09335	0.22	-2.1
1,767,348	+		LU632_RS09335	0.22	+0.5
1,767,349	-		LU632_RS09335	0.23	+0.1
1,767,505	+		LU632_RS09335	0.31	-1.1
1,767,506	-		LU632_RS09335	0.31	+0.3
1,767,506	-		LU632_RS09335	0.31	-2.3
1,767,553	+		LU632_RS09335	0.33	+1.3
1,767,659	+		LU632_RS09335	0.39	+0.5
1,767,660	-		LU632_RS09335	0.39	+1.1
1,767,660	-		LU632_RS09335	0.39	-1.5
1,767,660	-		LU632_RS09335	0.39	+1.8
1,767,743	+		LU632_RS09335	0.43	-0.1
1,767,743	+		LU632_RS09335	0.43	+0.6
1,767,743	+		LU632_RS09335	0.43	+0.5
1,767,744	-		LU632_RS09335	0.43	+2.6
1,767,761	+		LU632_RS09335	0.44	+1.8
1,767,761	+		LU632_RS09335	0.44	+1.8
1,767,761	+		LU632_RS09335	0.44	+0.1
1,767,762	-		LU632_RS09335	0.44	+0.1
1,767,765	-		LU632_RS09335	0.44	+0.0
1,767,780	+		LU632_RS09335	0.45	-0.9
1,767,825	-		LU632_RS09335	0.48	-0.9
1,767,875	-		LU632_RS09335	0.50	+1.8
1,767,899	+		LU632_RS09335	0.52	-0.1
1,767,906	-		LU632_RS09335	0.52	+0.6
1,767,942	-		LU632_RS09335	0.54	+0.9
1,768,031	+		LU632_RS09335	0.58	-1.5
1,768,166	+		LU632_RS09335	0.66	-0.5
1,768,167	-		LU632_RS09335	0.66	-0.8
1,768,167	-		LU632_RS09335	0.66	+0.4
1,768,310	+		LU632_RS09335	0.73	-0.6
1,768,310	+		LU632_RS09335	0.73	+1.1
1,768,545	-		LU632_RS09335	0.86	+0.7
1,768,629	-				+1.1
1,768,629	-				-2.3
1,768,664	+				+2.0
1,768,693	+				-0.9
1,768,693	+				+0.7
1,768,856	-				+0.6
1,768,856	-				-0.8
1,768,929	+				+0.9
1,768,929	+				-0.3
1,768,929	+				+2.3
1,769,066	+	idi	LU632_RS09340	0.19	+1.7
1,769,117	+	idi	LU632_RS09340	0.28	+0.3
1,769,117	+	idi	LU632_RS09340	0.28	-1.8
1,769,118	-	idi	LU632_RS09340	0.29	-0.9
1,769,121	+	idi	LU632_RS09340	0.29	-0.5
1,769,121	+	idi	LU632_RS09340	0.29	-3.2
1,769,121	+	idi	LU632_RS09340	0.29	+0.5
1,769,122	-	idi	LU632_RS09340	0.29	+2.0
1,769,122	-	idi	LU632_RS09340	0.29	+0.5
1,769,122	-	idi	LU632_RS09340	0.29	-0.7
1,769,143	+	idi	LU632_RS09340	0.33	-0.2
1,769,187	-	idi	LU632_RS09340	0.41	-1.8
1,769,309	+	idi	LU632_RS09340	0.63	-1.5
1,769,309	+	idi	LU632_RS09340	0.63	-0.5
1,769,417	+	idi	LU632_RS09340	0.82	+0.0
1,769,418	-	idi	LU632_RS09340	0.82	+0.0