Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09235

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
1,741,055	+		LU632_RS09230	0.67	+0.0
1,741,056	-		LU632_RS09230	0.67	+0.6
1,741,056	-		LU632_RS09230	0.67	-2.1
1,741,056	-		LU632_RS09230	0.67	+2.4
1,741,056	-		LU632_RS09230	0.67	-1.8
1,741,056	-		LU632_RS09230	0.67	-2.1
1,741,056	-		LU632_RS09230	0.67	+1.0
1,741,056	-		LU632_RS09230	0.67	-1.5
1,741,056	-		LU632_RS09230	0.67	-3.3
1,741,056	-		LU632_RS09230	0.67	-0.2
1,741,077	-		LU632_RS09230	0.69	-0.5
1,741,077	-		LU632_RS09230	0.69	+1.5
1,741,109	+		LU632_RS09230	0.71	+1.0
1,741,109	+		LU632_RS09230	0.71	-2.5
1,741,265	+		LU632_RS09230	0.81	+0.5
1,741,350	-		LU632_RS09230	0.86	-1.5
1,741,391	+		LU632_RS09230	0.89	-2.2
1,741,392	-		LU632_RS09230	0.89	+0.1
1,741,553	+				-0.1
1,741,554	-				-1.8
1,741,556	+				-2.1
1,741,622	-				-0.8
1,741,664	+				-0.1
1,741,697	+				+0.5
1,741,704	+				-1.1
1,741,705	-				+1.5
1,741,716	+				+0.8
1,741,727	+				-2.1
1,741,880	+				+2.3
1,741,956	+				-1.3
1,741,956	+				+0.3
1,741,957	-				-0.2
1,741,985	+				-1.1
1,741,994	-				-2.8
1,741,994	-				+1.6
1,742,031	+				-0.8
1,742,062	-				-1.1
1,742,071	+				-2.3
1,742,148	+		LU632_RS09235	0.14	+0.6
1,742,153	-		LU632_RS09235	0.15	-0.7
1,742,153	-		LU632_RS09235	0.15	-0.1
1,742,287	-		LU632_RS09235	0.28	-0.3
1,742,287	-		LU632_RS09235	0.28	-2.9
1,742,287	-		LU632_RS09235	0.28	-2.8
1,742,314	-		LU632_RS09235	0.30	+0.3
1,742,400	+		LU632_RS09235	0.39	-2.6
1,742,400	+		LU632_RS09235	0.39	+1.3
1,742,400	+		LU632_RS09235	0.39	-1.5
1,742,400	+		LU632_RS09235	0.39	-2.3
1,742,401	-		LU632_RS09235	0.39	-0.3
1,742,487	+		LU632_RS09235	0.47	-0.5
1,742,533	+		LU632_RS09235	0.51	-1.2
1,742,597	+		LU632_RS09235	0.58	-4.1
1,742,653	-		LU632_RS09235	0.63	+1.6
1,742,653	-		LU632_RS09235	0.63	+1.4
1,742,655	+		LU632_RS09235	0.63	-2.2
1,742,753	+		LU632_RS09235	0.73	+1.5
1,742,753	+		LU632_RS09235	0.73	-2.1
1,742,862	+		LU632_RS09235	0.83	-3.9
1,742,863	-		LU632_RS09235	0.83	+0.8
1,743,046	-				-0.3
1,743,196	+		LU632_RS09240	0.14	+0.6
1,743,197	-		LU632_RS09240	0.14	+0.5
1,743,223	+		LU632_RS09240	0.17	-0.2
1,743,223	+		LU632_RS09240	0.17	+0.5
1,743,310	-		LU632_RS09240	0.25	-0.5
1,743,325	+		LU632_RS09240	0.27	-0.9
1,743,326	-		LU632_RS09240	0.27	+1.8
1,743,497	-		LU632_RS09240	0.44	+0.8
1,743,506	+		LU632_RS09240	0.45	+1.2
1,743,588	-		LU632_RS09240	0.54	-1.8
1,743,641	+		LU632_RS09240	0.59	+1.8
1,743,644	+		LU632_RS09240	0.59	-1.2
1,743,645	-		LU632_RS09240	0.59	+0.7
1,743,660	+		LU632_RS09240	0.61	-1.2
1,743,698	+		LU632_RS09240	0.65	-0.8
1,743,711	-		LU632_RS09240	0.66	+0.2
1,743,991	+				+2.1
1,744,028	+				-0.4