Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09230

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
1,739,232	-				+0.2
1,739,232	-				-2.4
1,739,254	-				-2.5
1,739,262	+				+2.8
1,739,262	+				-0.1
1,739,263	-				+0.7
1,739,267	-				-1.2
1,739,267	-				-1.5
1,739,267	-				-1.5
1,739,497	+				+0.4
1,739,498	-				-0.3
1,739,522	-				+0.7
1,739,523	+				-1.9
1,739,524	-				-0.8
1,739,546	+				-1.6
1,739,546	+				+0.5
1,739,547	-				+1.1
1,739,631	-				+0.5
1,739,631	-				+0.9
1,739,719	+				-1.8
1,739,719	+				-0.5
1,739,720	-				+2.1
1,739,722	-				-0.5
1,739,786	+				+3.4
1,739,786	+				+1.2
1,739,790	+				-3.2
1,739,922	+				-1.5
1,739,923	-				+3.5
1,739,923	-				-1.5
1,739,923	-				+1.2
1,739,967	+				-3.3
1,739,997	-				-2.3
1,740,063	-				+1.6
1,740,063	-				+0.2
1,740,128	-				+3.2
1,740,179	+		LU632_RS09230	0.12	+0.5
1,740,181	+		LU632_RS09230	0.12	+0.0
1,740,181	+		LU632_RS09230	0.12	-0.5
1,740,182	-		LU632_RS09230	0.12	+0.0
1,740,199	+		LU632_RS09230	0.13	-1.8
1,740,377	+		LU632_RS09230	0.24	+0.6
1,740,408	-		LU632_RS09230	0.26	-0.3
1,740,459	-		LU632_RS09230	0.29	-3.1
1,740,459	-		LU632_RS09230	0.29	+1.6
1,740,501	-		LU632_RS09230	0.32	+0.5
1,740,620	+		LU632_RS09230	0.40	-1.0
1,740,621	-		LU632_RS09230	0.40	-0.5
1,740,621	-		LU632_RS09230	0.40	+1.9
1,740,663	-		LU632_RS09230	0.42	-0.8
1,740,743	+		LU632_RS09230	0.47	-2.5
1,740,744	-		LU632_RS09230	0.47	+0.8
1,740,744	-		LU632_RS09230	0.47	+0.0
1,740,801	-		LU632_RS09230	0.51	-0.6
1,741,055	+		LU632_RS09230	0.67	+0.0
1,741,056	-		LU632_RS09230	0.67	+0.6
1,741,056	-		LU632_RS09230	0.67	-2.1
1,741,056	-		LU632_RS09230	0.67	+2.4
1,741,056	-		LU632_RS09230	0.67	-1.8
1,741,056	-		LU632_RS09230	0.67	-2.1
1,741,056	-		LU632_RS09230	0.67	+1.0
1,741,056	-		LU632_RS09230	0.67	-1.5
1,741,056	-		LU632_RS09230	0.67	-3.3
1,741,056	-		LU632_RS09230	0.67	-0.2
1,741,077	-		LU632_RS09230	0.69	-0.5
1,741,077	-		LU632_RS09230	0.69	+1.5
1,741,109	+		LU632_RS09230	0.71	+1.0
1,741,109	+		LU632_RS09230	0.71	-2.5
1,741,265	+		LU632_RS09230	0.81	+0.5
1,741,350	-		LU632_RS09230	0.86	-1.5
1,741,391	+		LU632_RS09230	0.89	-2.2
1,741,392	-		LU632_RS09230	0.89	+0.1
1,741,553	+				-0.1
1,741,554	-				-1.8
1,741,556	+				-2.1
1,741,622	-				-0.8
1,741,664	+				-0.1
1,741,697	+				+0.5
1,741,704	+				-1.1
1,741,705	-				+1.5
1,741,716	+				+0.8
1,741,727	+				-2.1
1,741,880	+				+2.3
1,741,956	+				-1.3
1,741,956	+				+0.3
1,741,957	-				-0.2
1,741,985	+				-1.1
1,741,994	-				-2.8
1,741,994	-				+1.6
1,742,031	+				-0.8
1,742,062	-				-1.1
1,742,071	+				-2.3
1,742,148	+		LU632_RS09235	0.14	+0.6
1,742,153	-		LU632_RS09235	0.15	-0.7
1,742,153	-		LU632_RS09235	0.15	-0.1
1,742,287	-		LU632_RS09235	0.28	-0.3
1,742,287	-		LU632_RS09235	0.28	-2.9
1,742,287	-		LU632_RS09235	0.28	-2.8
1,742,314	-		LU632_RS09235	0.30	+0.3
1,742,400	+		LU632_RS09235	0.39	-2.6
1,742,400	+		LU632_RS09235	0.39	+1.3
1,742,400	+		LU632_RS09235	0.39	-1.5
1,742,400	+		LU632_RS09235	0.39	-2.3
1,742,401	-		LU632_RS09235	0.39	-0.3
1,742,487	+		LU632_RS09235	0.47	-0.5
1,742,533	+		LU632_RS09235	0.51	-1.2