Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08820

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
1,660,748	+		LU632_RS08815	0.41	-3.7
1,660,921	-		LU632_RS08815	0.55	-3.2
1,660,982	+		LU632_RS08815	0.60	+0.6
1,660,982	+		LU632_RS08815	0.60	-3.5
1,661,335	-		LU632_RS08815	0.89	-4.4
1,661,335	-		LU632_RS08815	0.89	-2.4
1,661,581	-				+0.6
1,661,601	+		LU632_RS08820	0.10	-2.7
1,661,602	-		LU632_RS08820	0.10	-2.9
1,661,648	-		LU632_RS08820	0.14	-0.4
1,661,649	+		LU632_RS08820	0.14	-2.6
1,661,650	-		LU632_RS08820	0.14	-2.6
1,661,650	-		LU632_RS08820	0.14	-2.2
1,661,667	+		LU632_RS08820	0.15	-3.4
1,661,667	+		LU632_RS08820	0.15	-3.5
1,661,668	-		LU632_RS08820	0.15	-4.4
1,661,691	+		LU632_RS08820	0.17	-4.7
1,661,739	-		LU632_RS08820	0.21	-0.4
1,661,860	-		LU632_RS08820	0.30	-1.0
1,661,958	+		LU632_RS08820	0.37	-3.9
1,662,033	+		LU632_RS08820	0.42	-3.1
1,662,091	+		LU632_RS08820	0.47	-3.7
1,662,336	+		LU632_RS08820	0.65	-1.4
1,662,337	-		LU632_RS08820	0.65	-2.6
1,662,358	+		LU632_RS08820	0.67	-1.4
1,662,369	-		LU632_RS08820	0.67	-1.4
1,662,375	+		LU632_RS08820	0.68	-4.7
1,662,376	-		LU632_RS08820	0.68	-5.3
1,662,404	-		LU632_RS08820	0.70	-1.0
1,662,436	-		LU632_RS08820	0.72	-5.0
1,662,436	-		LU632_RS08820	0.72	-1.0
1,662,550	-		LU632_RS08820	0.81	-1.4
1,662,550	-		LU632_RS08820	0.81	-1.7
1,662,550	-		LU632_RS08820	0.81	-1.4
1,662,550	-		LU632_RS08820	0.81	-2.0
1,662,602	-		LU632_RS08820	0.85	-3.2
1,662,678	-				-5.1
1,662,698	-				-3.7
1,662,771	+				-3.2
1,662,929	+				+2.2
1,662,984	+				+3.4
1,662,984	+				+1.3
1,662,984	+				+2.1
1,663,010	-				+3.6
1,663,058	-				+5.4
1,663,112	+	galF	LU632_RS08825	0.13	-0.4
1,663,115	-	galF	LU632_RS08825	0.13	+1.0
1,663,208	+	galF	LU632_RS08825	0.23	-1.0
1,663,270	+	galF	LU632_RS08825	0.30	+3.1
1,663,270	+	galF	LU632_RS08825	0.30	+2.1
1,663,271	-	galF	LU632_RS08825	0.30	+3.8
1,663,294	+	galF	LU632_RS08825	0.33	+2.8
1,663,294	+	galF	LU632_RS08825	0.33	+4.0
1,663,354	+	galF	LU632_RS08825	0.40	+0.6
1,663,411	+	galF	LU632_RS08825	0.46	+2.0
1,663,483	-	galF	LU632_RS08825	0.54	+3.4
1,663,495	+	galF	LU632_RS08825	0.55	+3.7
1,663,495	+	galF	LU632_RS08825	0.55	-2.7
1,663,496	-	galF	LU632_RS08825	0.56	+1.1
1,663,520	+	galF	LU632_RS08825	0.58	+4.0
1,663,576	+	galF	LU632_RS08825	0.64	+2.3
1,663,774	+	galF	LU632_RS08825	0.87	+0.9