Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08355

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
1,571,170	-		LU632_RS08345	0.76	-3.3
1,571,419	+		LU632_RS08345	0.89	-1.3
1,571,419	+		LU632_RS08345	0.89	-1.7
1,571,419	+		LU632_RS08345	0.89	-1.3
1,571,419	+		LU632_RS08345	0.89	+0.7
1,571,420	-		LU632_RS08345	0.89	-0.9
1,571,491	+				+1.7
1,571,492	-				+2.8
1,571,526	+				-1.0
1,571,623	+				+1.7
1,571,692	-				+0.5
1,571,701	-				-0.0
1,571,722	+				+0.5
1,571,813	-				-2.3
1,571,866	-				-0.2
1,571,913	-				-1.3
1,571,939	-				+1.3
1,572,058	+		LU632_RS08350	0.45	-2.2
1,572,059	-		LU632_RS08350	0.46	+0.0
1,572,090	-		LU632_RS08350	0.62	-0.9
1,572,091	+		LU632_RS08350	0.62	-1.3
1,572,092	-		LU632_RS08350	0.63	-1.8
1,572,161	+				-1.3
1,573,329	-				+0.4
1,573,356	+		LU632_RS08360	0.14	-1.7
1,573,356	+		LU632_RS08360	0.14	-0.9
1,573,415	-		LU632_RS08360	0.30	-0.7
1,573,438	-		LU632_RS08360	0.36	+0.6
1,573,441	-		LU632_RS08360	0.36	+1.5
1,573,453	+		LU632_RS08360	0.40	+1.4
1,573,804	-		LU632_RS08365	0.32	+1.8
1,573,889	-		LU632_RS08365	0.54	-0.8
1,573,933	+		LU632_RS08365	0.66	-0.3
1,573,934	-		LU632_RS08365	0.66	-2.3
1,574,034	+				-1.0
1,574,035	-				+1.4
1,574,035	-				-1.0
1,574,057	+				+0.2
1,574,057	+				-2.7
1,574,062	-				+0.6
1,574,062	-				-2.3
1,574,062	-				+0.3
1,574,062	-				-0.4