Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08135

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
1,523,322	+		LU632_RS08130	0.74	+0.6
1,523,322	+		LU632_RS08130	0.74	-2.5
1,523,323	-		LU632_RS08130	0.74	-0.3
1,523,323	-		LU632_RS08130	0.74	+0.1
1,523,323	-		LU632_RS08130	0.74	-0.9
1,523,550	+				+0.4
1,523,718	+				-0.1
1,523,728	+				+3.0
1,523,747	+				-0.1
1,523,747	+				+1.8
1,523,747	+				+0.8
1,523,759	+				-0.3
1,523,760	-				-1.9
1,523,760	-				-0.7
1,523,786	-				+2.2
1,523,786	-				-0.6
1,523,816	+				+0.7
1,523,817	-				-0.8
1,523,862	+				+0.4
1,523,862	+				-0.8
1,523,863	-				+0.1
1,523,863	-				+0.5
1,523,863	-				-0.1
1,523,863	-				+0.8
1,523,899	+				-1.1
1,523,899	+				-0.2
1,523,900	-				+0.3
1,523,900	-				+0.1
1,523,929	+				+0.1
1,523,951	+				-2.3
1,523,952	-				-1.5
1,523,987	-				-1.3
1,524,100	-		LU632_RS08135	0.13	+2.9
1,524,100	-		LU632_RS08135	0.13	+0.7
1,524,844	-				-1.2
1,524,909	+				+1.1
1,524,962	+		LU632_RS08140	0.13	-2.3
1,525,005	+		LU632_RS08140	0.22	+1.1
1,525,058	+		LU632_RS08140	0.32	-1.9
1,525,137	+		LU632_RS08140	0.48	-3.0
1,525,145	+		LU632_RS08140	0.50	+0.9
1,525,152	-		LU632_RS08140	0.51	+0.9
1,525,224	+		LU632_RS08140	0.66	-3.1
1,525,238	+		LU632_RS08140	0.69	+0.3
1,525,403	+				+0.2
1,525,404	-				-0.1
1,525,433	+				+1.0
1,525,433	+				+1.3
1,525,433	+				-1.3
1,525,434	-				-0.7
1,525,434	-				+1.8
1,525,434	-				+0.1
1,525,501	+				-1.3
1,525,588	+	yfaE	LU632_RS08145	0.34	+3.7
1,525,633	+	yfaE	LU632_RS08145	0.51	-2.1
1,525,652	-	yfaE	LU632_RS08145	0.58	-0.3