Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS07880 and yfcF are separated by 226 nucleotides yfcF and yfcD are separated by 94 nucleotides yfcD and LU632_RS07895 are separated by 70 nucleotides LU632_RS07895 and LU632_RS07900 are separated by 16 nucleotides
LU632_RS07880: LU632_RS07880 - TIGR01777 family oxidoreductase, at 1,472,086 to 1,472,979
_RS07880
LU632_RS07885: yfcF - glutathione transferase, at 1,473,206 to 1,473,853
yfcF
LU632_RS07890: yfcD - NUDIX hydrolase YfcD, at 1,473,948 to 1,474,490
yfcD
LU632_RS07895: LU632_RS07895 - IS1 family transposase, at 1,474,561 to 1,475,258
_RS07895
LU632_RS07900: LU632_RS07900 - ATP-binding cassette domain-containing protein, at 1,475,275 to 1,475,790
_RS07900
Position (kb) 1473
1474
1475 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1472.973 kb on + strand at 1472.974 kb on - strand at 1473.121 kb on + strand at 1473.122 kb on - strand at 1473.224 kb on - strand at 1473.224 kb on - strand at 1473.258 kb on - strand at 1473.363 kb on + strand, within yfcF at 1473.363 kb on + strand, within yfcF at 1473.363 kb on + strand, within yfcF at 1473.363 kb on + strand, within yfcF at 1473.363 kb on + strand, within yfcF at 1473.363 kb on + strand, within yfcF at 1473.364 kb on - strand, within yfcF at 1473.364 kb on - strand, within yfcF at 1473.364 kb on - strand, within yfcF at 1473.552 kb on + strand, within yfcF at 1473.679 kb on + strand, within yfcF at 1473.684 kb on + strand, within yfcF at 1473.759 kb on + strand, within yfcF at 1473.779 kb on + strand, within yfcF at 1473.852 kb on - strand at 1473.913 kb on - strand at 1473.971 kb on - strand at 1473.971 kb on - strand at 1473.998 kb on + strand at 1474.006 kb on + strand, within yfcD at 1474.009 kb on + strand, within yfcD at 1474.009 kb on + strand, within yfcD at 1474.065 kb on + strand, within yfcD at 1474.066 kb on - strand, within yfcD at 1474.066 kb on - strand, within yfcD at 1474.066 kb on - strand, within yfcD at 1474.066 kb on - strand, within yfcD at 1474.130 kb on + strand, within yfcD at 1474.488 kb on + strand at 1474.489 kb on - strand at 1474.501 kb on + strand at 1474.502 kb on - strand at 1475.336 kb on - strand, within LU632_RS07900 at 1475.336 kb on - strand, within LU632_RS07900 at 1475.350 kb on + strand, within LU632_RS07900 at 1475.351 kb on - strand, within LU632_RS07900 at 1475.389 kb on - strand, within LU632_RS07900 at 1475.389 kb on - strand, within LU632_RS07900 at 1475.397 kb on + strand, within LU632_RS07900 at 1475.441 kb on + strand, within LU632_RS07900 at 1475.441 kb on + strand, within LU632_RS07900 at 1475.447 kb on + strand, within LU632_RS07900
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 1,472,973 + -1.7 1,472,974 - -4.0 1,473,121 + +1.3 1,473,122 - +1.5 1,473,224 - -1.9 1,473,224 - +2.4 1,473,258 - -2.4 1,473,363 + yfcF LU632_RS07885 0.24 +0.8 1,473,363 + yfcF LU632_RS07885 0.24 -2.2 1,473,363 + yfcF LU632_RS07885 0.24 +0.2 1,473,363 + yfcF LU632_RS07885 0.24 -0.4 1,473,363 + yfcF LU632_RS07885 0.24 -2.2 1,473,363 + yfcF LU632_RS07885 0.24 -4.7 1,473,364 - yfcF LU632_RS07885 0.24 -2.7 1,473,364 - yfcF LU632_RS07885 0.24 +0.3 1,473,364 - yfcF LU632_RS07885 0.24 +0.4 1,473,552 + yfcF LU632_RS07885 0.53 -0.8 1,473,679 + yfcF LU632_RS07885 0.73 -1.0 1,473,684 + yfcF LU632_RS07885 0.74 -0.4 1,473,759 + yfcF LU632_RS07885 0.85 -2.6 1,473,779 + yfcF LU632_RS07885 0.88 -0.5 1,473,852 - -0.3 1,473,913 - +1.2 1,473,971 - -1.1 1,473,971 - -0.7 1,473,998 + -0.7 1,474,006 + yfcD LU632_RS07890 0.11 -2.6 1,474,009 + yfcD LU632_RS07890 0.11 -0.6 1,474,009 + yfcD LU632_RS07890 0.11 -0.2 1,474,065 + yfcD LU632_RS07890 0.22 -2.7 1,474,066 - yfcD LU632_RS07890 0.22 +1.5 1,474,066 - yfcD LU632_RS07890 0.22 -1.0 1,474,066 - yfcD LU632_RS07890 0.22 -1.7 1,474,066 - yfcD LU632_RS07890 0.22 +1.8 1,474,130 + yfcD LU632_RS07890 0.34 +0.6 1,474,488 + -1.0 1,474,489 - -0.6 1,474,501 + +0.1 1,474,502 - +2.0 1,475,336 - LU632_RS07900 0.12 -2.0 1,475,336 - LU632_RS07900 0.12 -1.8 1,475,350 + LU632_RS07900 0.15 -2.9 1,475,351 - LU632_RS07900 0.15 +1.5 1,475,389 - LU632_RS07900 0.22 -0.1 1,475,389 - LU632_RS07900 0.22 -0.4 1,475,397 + LU632_RS07900 0.24 -0.6 1,475,441 + LU632_RS07900 0.32 -0.2 1,475,441 + LU632_RS07900 0.32 -2.4 1,475,447 + LU632_RS07900 0.33 -3.7
Or see this region's nucleotide sequence