Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purF and LU632_RS07870 are separated by 96 nucleotides LU632_RS07870 and LU632_RS07875 are separated by 37 nucleotides LU632_RS07875 and LU632_RS07880 are separated by 319 nucleotides
LU632_RS07865: purF - amidophosphoribosyltransferase, at 1,469,155 to 1,470,672
purF
LU632_RS07870: LU632_RS07870 - UbiX family flavin prenyltransferase, at 1,470,769 to 1,471,338
_RS07870
LU632_RS07875: LU632_RS07875 - ATP-binding cassette domain-containing protein, at 1,471,376 to 1,471,766
_RS07875
LU632_RS07880: LU632_RS07880 - TIGR01777 family oxidoreductase, at 1,472,086 to 1,472,979
_RS07880
Position (kb) 1470
1471
1472 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 1469.769 kb on + strand, within purF at 1469.769 kb on + strand, within purF at 1469.769 kb on + strand, within purF at 1469.769 kb on + strand, within purF at 1469.769 kb on + strand, within purF at 1469.769 kb on + strand, within purF at 1469.770 kb on - strand, within purF at 1469.770 kb on - strand, within purF at 1469.770 kb on - strand, within purF at 1469.804 kb on + strand, within purF at 1469.804 kb on + strand, within purF at 1469.805 kb on - strand, within purF at 1469.848 kb on + strand, within purF at 1469.848 kb on + strand, within purF at 1469.849 kb on - strand, within purF at 1469.905 kb on - strand, within purF at 1469.905 kb on - strand, within purF at 1469.923 kb on + strand, within purF at 1469.923 kb on + strand, within purF at 1469.924 kb on - strand, within purF at 1469.971 kb on + strand, within purF at 1469.989 kb on - strand, within purF at 1470.041 kb on + strand, within purF at 1470.041 kb on + strand, within purF at 1470.041 kb on + strand, within purF at 1470.042 kb on - strand, within purF at 1470.159 kb on + strand, within purF at 1470.159 kb on + strand, within purF at 1470.159 kb on + strand, within purF at 1470.160 kb on - strand, within purF at 1470.160 kb on - strand, within purF at 1470.207 kb on + strand, within purF at 1470.252 kb on - strand, within purF at 1470.328 kb on + strand, within purF at 1470.329 kb on - strand, within purF at 1470.381 kb on + strand, within purF at 1470.382 kb on - strand, within purF at 1470.382 kb on - strand, within purF at 1470.382 kb on - strand, within purF at 1470.382 kb on - strand, within purF at 1470.551 kb on - strand at 1470.578 kb on - strand at 1470.689 kb on - strand at 1470.695 kb on + strand at 1470.695 kb on + strand at 1470.698 kb on + strand at 1470.698 kb on + strand at 1470.698 kb on + strand at 1470.698 kb on + strand at 1470.698 kb on + strand at 1470.698 kb on + strand at 1470.698 kb on + strand at 1470.699 kb on - strand at 1470.699 kb on - strand at 1470.699 kb on - strand at 1470.714 kb on + strand at 1471.336 kb on + strand at 1471.337 kb on - strand at 1471.398 kb on - strand at 1471.566 kb on - strand, within LU632_RS07875 at 1471.681 kb on + strand, within LU632_RS07875 at 1471.736 kb on - strand at 1471.736 kb on - strand at 1471.764 kb on + strand at 1471.764 kb on + strand at 1471.765 kb on - strand at 1471.897 kb on + strand at 1471.947 kb on + strand at 1471.947 kb on + strand at 1472.033 kb on + strand at 1472.033 kb on + strand at 1472.033 kb on + strand at 1472.034 kb on - strand at 1472.034 kb on - strand at 1472.034 kb on - strand at 1472.082 kb on + strand at 1472.082 kb on + strand at 1472.088 kb on - strand at 1472.133 kb on + strand at 1472.236 kb on + strand, within LU632_RS07880 at 1472.289 kb on + strand, within LU632_RS07880 at 1472.289 kb on + strand, within LU632_RS07880 at 1472.289 kb on + strand, within LU632_RS07880 at 1472.289 kb on + strand, within LU632_RS07880 at 1472.290 kb on - strand, within LU632_RS07880 at 1472.293 kb on + strand, within LU632_RS07880 at 1472.293 kb on + strand, within LU632_RS07880 at 1472.294 kb on - strand, within LU632_RS07880 at 1472.294 kb on - strand, within LU632_RS07880 at 1472.299 kb on - strand, within LU632_RS07880
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 1,469,769 + purF LU632_RS07865 0.40 -4.6 1,469,769 + purF LU632_RS07865 0.40 -4.4 1,469,769 + purF LU632_RS07865 0.40 -5.5 1,469,769 + purF LU632_RS07865 0.40 -3.1 1,469,769 + purF LU632_RS07865 0.40 -3.6 1,469,769 + purF LU632_RS07865 0.40 -4.2 1,469,770 - purF LU632_RS07865 0.41 -6.2 1,469,770 - purF LU632_RS07865 0.41 -2.7 1,469,770 - purF LU632_RS07865 0.41 -2.9 1,469,804 + purF LU632_RS07865 0.43 -3.5 1,469,804 + purF LU632_RS07865 0.43 -6.1 1,469,805 - purF LU632_RS07865 0.43 -3.9 1,469,848 + purF LU632_RS07865 0.46 -2.6 1,469,848 + purF LU632_RS07865 0.46 -3.2 1,469,849 - purF LU632_RS07865 0.46 -3.4 1,469,905 - purF LU632_RS07865 0.49 -5.5 1,469,905 - purF LU632_RS07865 0.49 -3.1 1,469,923 + purF LU632_RS07865 0.51 -4.6 1,469,923 + purF LU632_RS07865 0.51 -1.4 1,469,924 - purF LU632_RS07865 0.51 -4.6 1,469,971 + purF LU632_RS07865 0.54 -6.2 1,469,989 - purF LU632_RS07865 0.55 -0.4 1,470,041 + purF LU632_RS07865 0.58 -2.4 1,470,041 + purF LU632_RS07865 0.58 -5.9 1,470,041 + purF LU632_RS07865 0.58 -4.2 1,470,042 - purF LU632_RS07865 0.58 -4.9 1,470,159 + purF LU632_RS07865 0.66 -3.0 1,470,159 + purF LU632_RS07865 0.66 -5.5 1,470,159 + purF LU632_RS07865 0.66 -3.7 1,470,160 - purF LU632_RS07865 0.66 -1.4 1,470,160 - purF LU632_RS07865 0.66 -1.0 1,470,207 + purF LU632_RS07865 0.69 +0.6 1,470,252 - purF LU632_RS07865 0.72 -5.7 1,470,328 + purF LU632_RS07865 0.77 -3.7 1,470,329 - purF LU632_RS07865 0.77 -2.7 1,470,381 + purF LU632_RS07865 0.81 -4.2 1,470,382 - purF LU632_RS07865 0.81 +0.6 1,470,382 - purF LU632_RS07865 0.81 -0.4 1,470,382 - purF LU632_RS07865 0.81 -3.8 1,470,382 - purF LU632_RS07865 0.81 -3.0 1,470,551 - -3.9 1,470,578 - -1.4 1,470,689 - +0.6 1,470,695 + +0.6 1,470,695 + +0.4 1,470,698 + +0.6 1,470,698 + +1.5 1,470,698 + +0.9 1,470,698 + -2.2 1,470,698 + -0.8 1,470,698 + +1.0 1,470,698 + -0.4 1,470,699 - -1.4 1,470,699 - +0.0 1,470,699 - +1.4 1,470,714 + -2.0 1,471,336 + +3.5 1,471,337 - -1.3 1,471,398 - +0.7 1,471,566 - LU632_RS07875 0.49 -0.7 1,471,681 + LU632_RS07875 0.78 +0.4 1,471,736 - +0.6 1,471,736 - -1.3 1,471,764 + -1.3 1,471,764 + -0.7 1,471,765 - +3.0 1,471,897 + +1.7 1,471,947 + +0.4 1,471,947 + -0.6 1,472,033 + +1.6 1,472,033 + -2.6 1,472,033 + -3.0 1,472,034 - -0.6 1,472,034 - +1.0 1,472,034 - -1.1 1,472,082 + -0.1 1,472,082 + -3.0 1,472,088 - +0.8 1,472,133 + -2.5 1,472,236 + LU632_RS07880 0.17 -0.4 1,472,289 + LU632_RS07880 0.23 +0.8 1,472,289 + LU632_RS07880 0.23 +0.6 1,472,289 + LU632_RS07880 0.23 +0.6 1,472,289 + LU632_RS07880 0.23 -0.7 1,472,290 - LU632_RS07880 0.23 +0.3 1,472,293 + LU632_RS07880 0.23 -1.0 1,472,293 + LU632_RS07880 0.23 -2.0 1,472,294 - LU632_RS07880 0.23 +0.2 1,472,294 - LU632_RS07880 0.23 -0.4 1,472,299 - LU632_RS07880 0.24 -0.4
Or see this region's nucleotide sequence