Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS07785 and LU632_RS07790 are separated by 48 nucleotides LU632_RS07790 and LU632_RS07795 are separated by 30 nucleotides LU632_RS07795 and mnmC are separated by 49 nucleotides mnmC and fabB are separated by 155 nucleotides
LU632_RS07785: LU632_RS07785 - sulfite exporter TauE/SafE family protein, at 1,451,208 to 1,452,011
_RS07785
LU632_RS07790: LU632_RS07790 - elongation factor P hydroxylase, at 1,452,060 to 1,452,605
_RS07790
LU632_RS07795: LU632_RS07795 - YfcL family protein, at 1,452,636 to 1,452,917
_RS07795
LU632_RS07800: mnmC - bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC, at 1,452,967 to 1,454,967
mnmC
LU632_RS07805: fabB - beta-ketoacyl-ACP synthase I, at 1,455,123 to 1,456,346
fabB
Position (kb) 1452
1453
1454
1455 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1451.967 kb on + strand at 1451.967 kb on + strand at 1451.967 kb on + strand at 1451.968 kb on - strand at 1451.968 kb on - strand at 1451.968 kb on - strand at 1452.140 kb on - strand, within LU632_RS07790 at 1452.202 kb on + strand, within LU632_RS07790 at 1452.216 kb on + strand, within LU632_RS07790 at 1452.216 kb on + strand, within LU632_RS07790 at 1452.219 kb on + strand, within LU632_RS07790 at 1452.220 kb on - strand, within LU632_RS07790 at 1452.276 kb on - strand, within LU632_RS07790 at 1452.276 kb on - strand, within LU632_RS07790 at 1452.530 kb on + strand, within LU632_RS07790 at 1452.530 kb on + strand, within LU632_RS07790 at 1452.531 kb on - strand, within LU632_RS07790 at 1452.550 kb on - strand, within LU632_RS07790 at 1452.552 kb on + strand at 1452.553 kb on - strand at 1452.635 kb on + strand at 1452.635 kb on + strand at 1452.636 kb on - strand at 1452.636 kb on - strand at 1452.659 kb on + strand at 1452.660 kb on - strand at 1452.761 kb on - strand, within LU632_RS07795 at 1452.885 kb on - strand, within LU632_RS07795 at 1452.974 kb on - strand at 1453.018 kb on - strand at 1453.136 kb on - strand at 1453.136 kb on - strand at 1453.199 kb on + strand, within mnmC at 1453.288 kb on - strand, within mnmC at 1453.299 kb on + strand, within mnmC at 1453.300 kb on - strand, within mnmC at 1453.311 kb on + strand, within mnmC at 1453.339 kb on + strand, within mnmC at 1453.339 kb on + strand, within mnmC at 1453.406 kb on + strand, within mnmC at 1453.407 kb on - strand, within mnmC at 1453.419 kb on + strand, within mnmC at 1453.419 kb on + strand, within mnmC at 1453.420 kb on - strand, within mnmC at 1453.420 kb on - strand, within mnmC at 1453.420 kb on - strand, within mnmC at 1453.467 kb on - strand, within mnmC at 1453.467 kb on - strand, within mnmC at 1453.538 kb on + strand, within mnmC at 1453.538 kb on + strand, within mnmC at 1453.538 kb on + strand, within mnmC at 1453.538 kb on + strand, within mnmC at 1453.538 kb on + strand, within mnmC at 1453.538 kb on + strand, within mnmC at 1453.539 kb on - strand, within mnmC at 1453.539 kb on - strand, within mnmC at 1453.539 kb on - strand, within mnmC at 1453.540 kb on + strand, within mnmC at 1453.540 kb on + strand, within mnmC at 1453.540 kb on + strand, within mnmC at 1453.540 kb on + strand, within mnmC at 1453.541 kb on - strand, within mnmC at 1453.541 kb on - strand, within mnmC at 1453.689 kb on + strand, within mnmC at 1453.689 kb on + strand, within mnmC at 1453.770 kb on - strand, within mnmC at 1453.770 kb on - strand, within mnmC at 1453.824 kb on + strand, within mnmC at 1453.959 kb on - strand, within mnmC at 1453.959 kb on - strand, within mnmC at 1454.091 kb on - strand, within mnmC at 1454.293 kb on - strand, within mnmC at 1454.337 kb on + strand, within mnmC at 1454.353 kb on - strand, within mnmC at 1454.485 kb on + strand, within mnmC at 1454.485 kb on + strand, within mnmC at 1454.486 kb on - strand, within mnmC at 1454.486 kb on - strand, within mnmC at 1454.486 kb on - strand, within mnmC at 1454.496 kb on + strand, within mnmC at 1454.497 kb on - strand, within mnmC at 1455.004 kb on - strand at 1455.038 kb on + strand at 1455.039 kb on - strand at 1455.101 kb on + strand at 1455.101 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS) remove 1,451,967 + +1.8 1,451,967 + -0.3 1,451,967 + +1.4 1,451,968 - +1.4 1,451,968 - +1.0 1,451,968 - +0.1 1,452,140 - LU632_RS07790 0.15 +0.4 1,452,202 + LU632_RS07790 0.26 +0.1 1,452,216 + LU632_RS07790 0.29 -2.2 1,452,216 + LU632_RS07790 0.29 -2.5 1,452,219 + LU632_RS07790 0.29 +0.5 1,452,220 - LU632_RS07790 0.29 -0.1 1,452,276 - LU632_RS07790 0.40 +0.9 1,452,276 - LU632_RS07790 0.40 +1.6 1,452,530 + LU632_RS07790 0.86 -0.6 1,452,530 + LU632_RS07790 0.86 +1.1 1,452,531 - LU632_RS07790 0.86 +1.3 1,452,550 - LU632_RS07790 0.90 -0.2 1,452,552 + +0.3 1,452,553 - -1.2 1,452,635 + +0.9 1,452,635 + +1.9 1,452,636 - +1.0 1,452,636 - +2.2 1,452,659 + +0.6 1,452,660 - -2.6 1,452,761 - LU632_RS07795 0.44 -0.4 1,452,885 - LU632_RS07795 0.88 +1.8 1,452,974 - +0.6 1,453,018 - -1.5 1,453,136 - +0.5 1,453,136 - -2.2 1,453,199 + mnmC LU632_RS07800 0.12 -1.0 1,453,288 - mnmC LU632_RS07800 0.16 +3.0 1,453,299 + mnmC LU632_RS07800 0.17 -0.7 1,453,300 - mnmC LU632_RS07800 0.17 +0.0 1,453,311 + mnmC LU632_RS07800 0.17 -0.9 1,453,339 + mnmC LU632_RS07800 0.19 +0.4 1,453,339 + mnmC LU632_RS07800 0.19 -1.0 1,453,406 + mnmC LU632_RS07800 0.22 +0.2 1,453,407 - mnmC LU632_RS07800 0.22 +1.1 1,453,419 + mnmC LU632_RS07800 0.23 -1.1 1,453,419 + mnmC LU632_RS07800 0.23 -1.4 1,453,420 - mnmC LU632_RS07800 0.23 +0.9 1,453,420 - mnmC LU632_RS07800 0.23 +0.5 1,453,420 - mnmC LU632_RS07800 0.23 -1.1 1,453,467 - mnmC LU632_RS07800 0.25 -1.4 1,453,467 - mnmC LU632_RS07800 0.25 -0.2 1,453,538 + mnmC LU632_RS07800 0.29 +0.3 1,453,538 + mnmC LU632_RS07800 0.29 -0.5 1,453,538 + mnmC LU632_RS07800 0.29 -0.2 1,453,538 + mnmC LU632_RS07800 0.29 -0.5 1,453,538 + mnmC LU632_RS07800 0.29 -0.6 1,453,538 + mnmC LU632_RS07800 0.29 -3.5 1,453,539 - mnmC LU632_RS07800 0.29 -0.4 1,453,539 - mnmC LU632_RS07800 0.29 -0.3 1,453,539 - mnmC LU632_RS07800 0.29 +0.1 1,453,540 + mnmC LU632_RS07800 0.29 +3.6 1,453,540 + mnmC LU632_RS07800 0.29 -0.2 1,453,540 + mnmC LU632_RS07800 0.29 -1.4 1,453,540 + mnmC LU632_RS07800 0.29 +4.8 1,453,541 - mnmC LU632_RS07800 0.29 +1.2 1,453,541 - mnmC LU632_RS07800 0.29 -1.4 1,453,689 + mnmC LU632_RS07800 0.36 -0.3 1,453,689 + mnmC LU632_RS07800 0.36 -0.2 1,453,770 - mnmC LU632_RS07800 0.40 -0.9 1,453,770 - mnmC LU632_RS07800 0.40 -0.5 1,453,824 + mnmC LU632_RS07800 0.43 -1.4 1,453,959 - mnmC LU632_RS07800 0.50 -1.0 1,453,959 - mnmC LU632_RS07800 0.50 +0.9 1,454,091 - mnmC LU632_RS07800 0.56 -0.4 1,454,293 - mnmC LU632_RS07800 0.66 +0.8 1,454,337 + mnmC LU632_RS07800 0.68 +0.9 1,454,353 - mnmC LU632_RS07800 0.69 -0.6 1,454,485 + mnmC LU632_RS07800 0.76 -1.4 1,454,485 + mnmC LU632_RS07800 0.76 +1.0 1,454,486 - mnmC LU632_RS07800 0.76 -1.8 1,454,486 - mnmC LU632_RS07800 0.76 -0.1 1,454,486 - mnmC LU632_RS07800 0.76 -3.6 1,454,496 + mnmC LU632_RS07800 0.76 +1.0 1,454,497 - mnmC LU632_RS07800 0.76 -2.6 1,455,004 - +1.8 1,455,038 + +1.0 1,455,039 - -1.0 1,455,101 + -3.1 1,455,101 + -3.0
Or see this region's nucleotide sequence