Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06895

Experiment: Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)
1,321,814	+				+0.3
1,321,815	-				-2.8
1,321,817	+				+3.4
1,322,079	+				-0.4
1,322,291	+		LU632_RS06885	0.76	+2.5
1,322,295	-		LU632_RS06885	0.77	-1.0
1,322,295	-		LU632_RS06885	0.77	+0.2
1,322,360	+				-0.2
1,322,602	+				-0.8
1,322,637	+				+0.4
1,322,643	+				+1.6
1,322,694	+				-1.0
1,322,694	+				+0.2
1,322,695	-				-3.1
1,322,741	+				+0.6
1,322,741	+				-2.1
1,322,741	+				-1.0
1,322,742	-				-0.2
1,322,742	-				+0.0
1,322,742	-				-0.4
1,322,742	-				-0.1
1,322,742	-				-3.6
1,322,742	-				+0.9
1,322,759	-	tnpA	LU632_RS06895	0.11	-0.2
1,322,765	+	tnpA	LU632_RS06895	0.12	+0.6
1,322,765	+	tnpA	LU632_RS06895	0.12	+1.2
1,322,766	-	tnpA	LU632_RS06895	0.12	-0.4
1,322,766	-	tnpA	LU632_RS06895	0.12	+0.6
1,322,836	+	tnpA	LU632_RS06895	0.28	-1.6
1,322,836	+	tnpA	LU632_RS06895	0.28	-0.5
1,322,836	+	tnpA	LU632_RS06895	0.28	+1.3
1,322,836	+	tnpA	LU632_RS06895	0.28	-1.2
1,322,837	-	tnpA	LU632_RS06895	0.29	-0.4
1,322,837	-	tnpA	LU632_RS06895	0.29	+1.0
1,322,837	-	tnpA	LU632_RS06895	0.29	-1.0
1,322,876	+	tnpA	LU632_RS06895	0.37	-0.2
1,322,897	+	tnpA	LU632_RS06895	0.42	-0.8
1,322,999	+	tnpA	LU632_RS06895	0.66	+4.5
1,323,012	-	tnpA	LU632_RS06895	0.69	-2.0
1,323,085	+	tnpA	LU632_RS06895	0.86	-1.1
1,323,086	-	tnpA	LU632_RS06895	0.86	+1.9
1,323,140	+				+0.3
1,323,141	-				+0.1
1,323,146	-				-0.1
1,323,160	-				+0.6
1,323,175	+				-0.3
1,323,204	+				+2.1
1,323,204	+				+1.0
1,323,205	-				-0.2
1,323,205	-				+2.0
1,323,220	+				-1.6
1,323,226	-				-0.3
1,323,268	+				-1.0
1,323,269	-				+1.0
1,323,562	+				+0.4
1,323,621	+				+0.6
1,323,640	+		LU632_RS06900	0.11	-0.4
1,323,654	+		LU632_RS06900	0.12	-0.6
1,323,654	+		LU632_RS06900	0.12	-5.0
1,323,654	+		LU632_RS06900	0.12	+1.4
1,323,654	+		LU632_RS06900	0.12	+0.9
1,323,654	+		LU632_RS06900	0.12	-1.2
1,323,654	+		LU632_RS06900	0.12	-1.4
1,323,655	-		LU632_RS06900	0.12	-2.0
1,323,655	-		LU632_RS06900	0.12	+0.9
1,323,658	+		LU632_RS06900	0.12	-1.8
1,323,658	+		LU632_RS06900	0.12	-0.4
1,323,658	+		LU632_RS06900	0.12	-4.1
1,323,819	-		LU632_RS06900	0.24	-3.2
1,323,827	+		LU632_RS06900	0.25	+1.9
1,323,881	+		LU632_RS06900	0.29	-0.8
1,323,930	-		LU632_RS06900	0.33	+0.9
1,324,136	-		LU632_RS06900	0.49	-0.4
1,324,136	-		LU632_RS06900	0.49	+1.0